Genome design of hybrid potato

The origin and widespread occurrence of Sli-based self-compatibility in potato

(2020) Corentin R. Clot et al.   THEORETICAL AND APPLIED GENETICS

Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum)

(2020) Natascha van Lieshout et al.   G3-Genes Genomes Genetics

Haplotype-resolved genome analyses of a heterozygous diploid potato

(2020) Qian Zhou et al.   NATURE GENETICS

The genetic basis of inbreeding depression in potato

(2019) Chunzhi Zhang et al.   NATURE GENETICS

The new potato

(2019) Erik Stokstad   SCIENCE

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Overcoming Self-Incompatibility in Diploid Potato Using CRISPR-Cas9

(2019) Felix Enciso-Rodriguez et al.   Frontiers in Plant Science

Induced High-Yield Production of Zeaxanthin, Lutein, and β-Carotene by a Mutant of Chlorella zofingiensis

(2018) Weiping Huang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

High-resolution comparative analysis of great ape genomes

(2018) Zev N. Kronenberg et al.   SCIENCE

Acquisition of deleterious mutations during potato polyploidization

(2018) Qun Lian et al.   Journal of Integrative Plant Biology

Genome diversity of tuber-bearingSolanumuncovers complex evolutionary history and targets of domestication in the cultivated potato

(2017) Michael A. Hardigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

Reinventing Potato as a Diploid Inbred Line–Based Crop

(2016) Shelley H. Jansky et al.   CROP SCIENCE

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development

(2016) Jie Cui et al.   PLANT CELL

Identification and reproducibility of diagnostic DNA markers for tuber starch and yield optimization in a novel association mapping population of potato (Solanum tuberosum L.)

(2016) E. M. Schönhals et al.   THEORETICAL AND APPLIED GENETICS

Self-Fertility in a Cultivated Diploid Potato Population Examined with the Infinium 8303 Potato Single-Nucleotide Polymorphism Array

(2016) Brenda A. Peterson et al.   Plant Genome

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

SIFT missense predictions for genomes

(2015) Robert Vaser et al.   Nature Protocols

History and Origin of Russet Burbank (Netted Gem) a Sport of Burbank

(2014) Paul C. Bethke et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Identification of pathogen genomic variants through an integrated pipeline

(2014) Micah J Manary et al.   BMC BIOINFORMATICS

A CRISPR/Cas9 toolkit for multiplex genome editing in plants

(2014) Hui-Li Xing et al.   BMC PLANT BIOLOGY

Systematics, Diversity, Genetics, and Evolution of Wild and Cultivated Potatoes

(2014) David M. Spooner et al.   BOTANICAL REVIEW

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps

(2013) Sanjeev Kumar Sharma et al.   G3-Genes Genomes Genetics

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Towards F1 Hybrid Seed Potato Breeding

(2011) Pim Lindhout et al.   POTATO RESEARCH

From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy

(2010) Bjorn Kloosterman et al.   BMC GENOMICS

The Use of True Potato Seed as Pro-poor Technology: The Efforts of an International Agricultural Research Institute to Innovating Potato Production

(2010) C. J. M. Almekinders et al.   POTATO RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield

(2008) Li Li et al.   THEORETICAL AND APPLIED GENETICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY