Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

(2021) Justin Maire et al.   ISME Journal

Exaiptasia diaphana from the great barrier reef: a valuable resource for coral symbiosis research

(2020) Ashley M. Dungan et al.   SYMBIOSIS

Viruses in the Built Environment (VIBE) meeting report

(2020) Aaron J. Prussin et al.   Microbiome

Cell Biology of Coral Symbiosis: Foundational Study Can Inform Solutions to the Coral Reef Crisis

(2019) Virginia M Weis   INTEGRATIVE AND COMPARATIVE BIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Coral microbiome dynamics, functions and design in a changing world

(2019) Madeleine J. H. van Oppen et al.   NATURE REVIEWS MICROBIOLOGY

Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

(2019) Wirulda Pootakham et al.   MicrobiologyOpen

Beneath the surface: community assembly and functions of the coral skeleton microbiome

(2019) Francesco Ricci et al.   Microbiome

The Effect of Thermal Stress on the Bacterial Microbiome of Exaiptasia diaphana

(2019) Leon M. Hartman et al.   Microorganisms

Coral physiology and microbiome dynamics under combined warming and ocean acidification

(2018) Andréa G. Grottoli et al.   PLoS One

Diversity and antimicrobial potential in sea anemone and holothurian microbiomes

(2018) Elizabeth León-Palmero et al.   PLoS One

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Global warming transforms coral reef assemblages

(2018) Terry P. Hughes et al.   NATURE

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Coral reefs in the Anthropocene

(2017) Terry P. Hughes et al.   NATURE

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Worldwide exploration of the microbiome harbored by the cnidarian model, Exaiptasia pallida (Agassiz in Verrill, 1864) indicates a lack of bacterial association specificity at a lower taxonomic rank

(2017) Tanya Brown et al.   PeerJ

The cnidome and internal morphology ofLophelia pertusa(Linnaeus, 1758) (Cnidaria, Anthozoa)

(2016) Susanna M. Strömberg et al.   ACTA ZOOLOGICA

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Visualization of coral host–pathogen interactions using a stable GFP-labeled Vibrio coralliilyticus strain

(2015) F. Joseph Pollock et al.   CORAL REEFS

Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates

(2015) Rebecca Fisher et al.   CURRENT BIOLOGY

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Coral-the world's most diverse symbiotic ecosystem

(2015) Linda L. Blackall et al.   MOLECULAR ECOLOGY

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Changes in the global value of ecosystem services

(2014) Robert Costanza et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Outcomes of Infections of Sea Anemone Aiptasia pallida with Vibrio spp. Pathogenic to Corals

(2014) William J. Zaragoza et al.   MICROBIAL ECOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genetic data of a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins

(2013) Daniel J. Thornhill et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Nutrient cycling in early coral life stages:Pocillopora damicornislarvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates

(2013) Janja Ceh et al.   Ecology and Evolution

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Sea Anemone (Cnidaria, Anthozoa, Actiniaria) Toxins: An Overview

(2012) Bárbara Frazão et al.   Marine Drugs

Biological and chemical characteristics of the coral gastric cavity

(2011) S. Agostini et al.   CORAL REEFS

New Method for Counting Bacteria Associated with Coral Mucus

(2010) M. Garren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial assemblages differ between compartments within the coral holobiont

(2010) M. J. Sweet et al.   CORAL REEFS

Fine-structural analysis of black band disease-infected coral reveals boring cyanobacteria and novel bacteria

(2010) AW Miller et al.   DISEASES OF AQUATIC ORGANISMS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Cnidarian internal stinging mechanism

(2009) A. Schlesinger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine α-proteobacteria and Rhodobacter sphaeroides

(2008) A. R. J. Curson et al.   ENVIRONMENTAL MICROBIOLOGY

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Coral Pathogens Identified for White Syndrome (WS) Epizootics in the Indo-Pacific

(2008) Meir Sussman et al.   PLoS One

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One

Cell biology in model systems as the key to understanding corals

(2008) Virginia M. Weis et al.   TRENDS IN ECOLOGY & EVOLUTION