A blood RNA transcriptome signature for COVID-19

Diagnostic SARS-CoV-2 Cycle Threshold Value Predicts Disease Severity, Survival, and Six-Month Sequelae in COVID-19 Symptomatic Patients

(2021) Mattia Trunfio et al.   Viruses-Basel

Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection

(2020) Yoann Zerbib et al.   BMC Medical Genomics

A novel coronavirus outbreak of global health concern

(2020) Chen Wang et al.   LANCET

Lymphopenia in COVID‐19: Therapeutic Opportunities

(2020) Nazanin Fathi et al.   CELL BIOLOGY INTERNATIONAL

RISK6, a 6-gene transcriptomic signature of TB disease risk, diagnosis and treatment response

(2020) Adam Penn-Nicholson et al.   Scientific Reports

Is ethnicity linked to incidence or outcomes of covid-19?

(2020) Kamlesh Khunti et al.   BMJ-British Medical Journal

Longitudinal characteristics of lymphocyte responses and cytokine profiles in the peripheral blood of SARS-CoV-2 infected patients

(2020) Jing Liu et al.   EBioMedicine

A blood RNA transcript signature for TB exposure in household contacts

(2020) Philip Kam Weng Kwan et al.   BMC INFECTIOUS DISEASES

Impact of SARS-CoV-2 Viral Load on Risk of Intubation and Mortality Among Hospitalized Patients with Coronavirus Disease 2019

(2020) Reed Magleby et al.   CLINICAL INFECTIOUS DISEASES

COVID19 in South Asians/Asian Indians: Heterogeneity of data and implications for pathophysiology and research

(2020) Ritesh Gupta et al.   DIABETES RESEARCH AND CLINICAL PRACTICE

Long-term consequences of COVID-19: research needs

(2020) Dana Yelin et al.   LANCET INFECTIOUS DISEASES

Lymphopenia an important immunological abnormality in patients with COVID‐19: Possible mechanisms

(2020) Abdollah Jafarzadeh et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

A modular transcriptional signature identifies phenotypic heterogeneity of human tuberculosis infection

(2018) Akul Singhania et al.   Nature Communications

Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection

(2017) Lien Anh Ha Do et al.   JOURNAL OF INFECTIOUS DISEASES

Epstein–Barr virus-associated lymphomas

(2017) Claire Shannon-Lowe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Diagnosis of Childhood Tuberculosis and Host RNA Expression in Africa

(2014) Suzanne T. Anderson et al.   NEW ENGLAND JOURNAL OF MEDICINE

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Detection of Tuberculosis in HIV-Infected and -Uninfected African Adults Using Whole Blood RNA Expression Signatures: A Case-Control Study

(2013) Myrsini Kaforou et al.   PLOS MEDICINE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Cellular transcriptional profiling in human lung epithelial cells infected by different subtypes of influenza A viruses reveals an overall down-regulation of the host p53 pathway

(2011) Olivier Terrier et al.   Virology Journal

An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis

(2010) Matthew P. R. Berry et al.   NATURE

Dual Role of p53 in Innate Antiviral Immunity

(2010) Carmen Rivas et al.   Viruses-Basel

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genomic transcriptional profiling identifies a candidate blood biomarker signature for the diagnosis of septicemic melioidosis

(2009) Rungnapa Pankla et al.   GENOME BIOLOGY

Innate immune response to viral infection

(2008) Shohei Koyama et al.   CYTOKINE