Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.
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Title
Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-06-27
DOI
10.1186/s12864-021-07803-y
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Note: Only part of the references are listed.- Construction of an Onion (Allium cepa L.) Genetic Linkage Map Using Genotyping-by-Sequencing Analysis with a Reference Gene Set and Identification of QTLs Controlling Anthocyanin Synthesis and Content
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- Development of a Genetic Map for Onion (Allium cepa L.) Using Reference-Free Genotyping-by-Sequencing and SNP Assays
- (2017) Jinkwan Jo et al. Frontiers in Plant Science
- RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines
- (2017) Mostafa Abdelrahman et al. PLoS One
- Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley
- (2016) Kotaro Takahagi et al. Scientific Reports
- Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)
- (2015) Hikaru Tsukazaki et al. MOLECULAR BREEDING
- Integrating transcriptome and target metabolome variability in doubled haploids of Allium cepa for abiotic stress protection
- (2015) Mostafa Abdelrahman et al. MOLECULAR BREEDING
- Transcriptome sequencing to produce SNP-based genetic maps of onion
- (2013) J. Duangjit et al. THEORETICAL AND APPLIED GENETICS
- AlliumMap-A comparative genomics resource for cultivated Allium vegetables
- (2012) John McCallum et al. BMC GENOMICS
- A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)
- (2012) Samantha Baldwin et al. BMC GENOMICS
- Discovery of a new source of resistance to Fusarium oxysporum, cause of Fusarium wilt in Allium fistulosum, located on chromosome 2 of Allium cepa Aggregatum group
- (2012) Hoa Q. Vu et al. GENOME
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Direct determination of the chromosomal location of bunching onion and bulb onion markers using bunching onion–shallot monosomic additions and allotriploid-bunching onion single alien deletions
- (2010) Hikaru Tsukazaki et al. THEORETICAL AND APPLIED GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Biochemical and Genetic Analysis of Carbohydrate Accumulation in Allium cepa L
- (2008) S. Yaguchi et al. PLANT AND CELL PHYSIOLOGY
- Construction of SSR-based chromosome map in bunching onion (Allium fistulosum)
- (2008) Hikaru Tsukazaki et al. THEORETICAL AND APPLIED GENETICS
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