Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.

Construction of an Onion (Allium cepa L.) Genetic Linkage Map Using Genotyping-by-Sequencing Analysis with a Reference Gene Set and Identification of QTLs Controlling Anthocyanin Synthesis and Content

(2020) Yousoo Choi et al.   Plants-Basel

Development of a Genetic Map for Onion (Allium cepa L.) Using Reference-Free Genotyping-by-Sequencing and SNP Assays

(2017) Jinkwan Jo et al.   Frontiers in Plant Science

RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines

(2017) Mostafa Abdelrahman et al.   PLoS One

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley

(2016) Kotaro Takahagi et al.   Scientific Reports

Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)

(2015) Hikaru Tsukazaki et al.   MOLECULAR BREEDING

Integrating transcriptome and target metabolome variability in doubled haploids of Allium cepa for abiotic stress protection

(2015) Mostafa Abdelrahman et al.   MOLECULAR BREEDING

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

AlliumMap-A comparative genomics resource for cultivated Allium vegetables

(2012) John McCallum et al.   BMC GENOMICS

A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

(2012) Samantha Baldwin et al.   BMC GENOMICS

Discovery of a new source of resistance to Fusarium oxysporum, cause of Fusarium wilt in Allium fistulosum, located on chromosome 2 of Allium cepa Aggregatum group

(2012) Hoa Q. Vu et al.   GENOME

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Direct determination of the chromosomal location of bunching onion and bulb onion markers using bunching onion–shallot monosomic additions and allotriploid-bunching onion single alien deletions

(2010) Hikaru Tsukazaki et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Biochemical and Genetic Analysis of Carbohydrate Accumulation in Allium cepa L

(2008) S. Yaguchi et al.   PLANT AND CELL PHYSIOLOGY

Construction of SSR-based chromosome map in bunching onion (Allium fistulosum)

(2008) Hikaru Tsukazaki et al.   THEORETICAL AND APPLIED GENETICS