Genus-level evolutionary relationships of FAR proteins reflect the diversity of lifestyles of free-living and parasitic nematodes

Speciation and adaptive evolution reshape antioxidant enzymatic system diversity across the phylum Nematoda

(2020) Lian Xu et al.   BMC BIOLOGY

Deuterated Polyunsaturated Fatty Acids Reduce Oxidative Stress and Extend the Lifespan of C. elegans

(2019) Caroline Beaudoin-Chabot et al.   Frontiers in Physiology

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics of the major parasitic worms

(2018)   NATURE GENETICS

Multifaceted Interactions Between Endophytes and Plant: Developments and Prospects

(2018) Ekta Khare et al.   Frontiers in Microbiology

Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus

(2017) Praveen Baskaran et al.   Genome Biology and Evolution

WormBase ParaSite − a comprehensive resource for helminth genomics

(2017) Kevin L. Howe et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Mono-unsaturated fatty acids link H3K4me3 modifiers to C. elegans lifespan

(2017) Shuo Han et al.   NATURE

Characterization and silencing of the fatty acid- and retinol-binding Pp-far-1 gene in Pratylenchus penetrans

(2017) P. Vieira et al.   PLANT PATHOLOGY

Meloidogyne incognita Fatty Acid- and Retinol- Binding Protein (Mi-FAR-1) Affects Nematode Infection of Plant Roots and the Attachment of Pasteuria penetrans Endospores

(2017) Victor Phani et al.   Frontiers in Microbiology

Characterizing the Spermatogonial Response to Retinoic Acid During the Onset of Spermatogenesis and Following Synchronization in the Neonatal Mouse Testis

(2016) K. S. Agrimson et al.   BIOLOGY OF REPRODUCTION

The genomic basis of parasitism in the Strongyloides clade of nematodes

(2016) Vicky L Hunt et al.   NATURE GENETICS

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

(2016) Zilong He et al.   NUCLEIC ACIDS RESEARCH

Diversity in the structures and ligand-binding sites of nematode fatty acid and retinol-binding proteins revealed by Na-FAR-1 from Necator americanus

(2015) M. F. Rey-Burusco et al.   BIOCHEMICAL JOURNAL

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock

(2015) Rahul Tyagi et al.   BIOTECHNOLOGY ADVANCES

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The unusual lipid binding proteins of parasitic helminths and their potential roles in parasitism and as therapeutic targets

(2015) Gisela R. Franchini et al.   PROSTAGLANDINS LEUKOTRIENES AND ESSENTIAL FATTY ACIDS

Molecular Identification and Functional Characterization of the Fatty Acid- and Retinoid-Binding Protein Gene Rs-far-1 in the Burrowing Nematode Radopholus similis (Tylenchida: Pratylenchidae)

(2015) Chao Zhang et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Jasmonate-Triggered Plant Immunity

(2014) Marcelo L. Campos et al.   JOURNAL OF CHEMICAL ECOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complex hybrid origins of the root knot nematodes revealed through comparative genomics

(2014) David H. Lunt et al.   PeerJ

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda

(2013) Philipp H Schiffer et al.   BMC GENOMICS

Polyunsaturated fatty acid derived signaling in reproduction and development: Insights fromCaenorhabditis elegansandDrosophila melanogaster

(2013) Tracy L. Vrablik et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Molecular Characterization and Functions of Fatty Acid and Retinoid Binding Protein Gene (Ab-far-1) in Aphelenchoides besseyi

(2013) Xi Cheng et al.   PLoS One

Fatty Acid-and Retinol-Binding Protein, Mj-FAR-1 Induces Tomato Host Susceptibility to Root-Knot Nematodes

(2013) Ionit Iberkleid et al.   PLoS One

A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora

(2013) Xiaodong Bai et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

(2012) Eva Chovancova et al.   PLoS Computational Biology

RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways

(2012) Jonathan D. Stoltzfus et al.   PLoS Neglected Tropical Diseases

An Entomopathogenic Nematode by Any Other Name

(2012) Adler R. Dillman et al.   PLoS Pathogens

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences

(2011) Joong-Ki Park et al.   BMC GENOMICS

Life Cycle Stage-resolved Proteomic Analysis of the Excretome/Secretome fromStrongyloides ratti—Identification of Stage-specific Proteases

(2011) Hanns Soblik et al.   MOLECULAR & CELLULAR PROTEOMICS

The draft genome of the parasitic nematode Trichinella spiralis

(2011) Makedonka Mitreva et al.   NATURE GENETICS

Fatty Acid Desaturation Links Germ Cell Loss to Longevity Through NHR-80/HNF4 in C. elegans

(2011) Jérôme Goudeau et al.   PLOS BIOLOGY

The origins of eukaryotic-like proteins in Legionella pneumophila

(2010) Mor N. Lurie-Weinberger et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Characterisation of a fatty acid and retinol binding protein orthologue from the hookworm Ancylostoma ceylanicum

(2009) Keke C. Fairfax et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Fatty Acid- and Retinoid-binding Proteins Have Distinct Binding Pockets for the Two Types of Cargo

(2009) Rositsa Jordanova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Forty years of helminth biochemistry

(2009) J. BARRETT   PARASITOLOGY