Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly

Designing a multi-species inoculant of phosphate rock-solubilizing bacteria compatible with arbuscular mycorrhizae for plant growth promotion in low-P soil amended with PR

(2020) Paola Magallon-Servin et al.   BIOLOGY AND FERTILITY OF SOILS

Application of beneficial microorganisms and their effects on soil, plants, and the environment: the scientific legacy of Professor Yoav Bashan

(2020) Luz E. de-Bashan et al.   BIOLOGY AND FERTILITY OF SOILS

Rhizosphere bacteria are more strongly related to plant root traits than fungi in temperate montane forests: insights from closed and open forest patches along an elevational gradient

(2020) Luis Merino-Martín et al.   PLANT AND SOIL

A core microbiota of the plant-earthworm interaction conserved across soils

(2020) Samuel Jacquiod et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root microbiome changes with root branching order and root chemistry in peach rhizosphere soil

(2020) Zahida H. Pervaiz et al.   Rhizosphere

Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce

(2019) Soumitra Paul Chowdhury et al.   ENVIRONMENTAL MICROBIOLOGY

Split‐root system optimization based on the survival, growth and development of the model Poaceae Brachypodium distachyon

(2019) Corinne Agapit et al.   PHYSIOLOGIA PLANTARUM

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Do nitrogen- and sulphur-remobilization-related parameters measured at the onset of the reproductive stage provide early indicators to adjust N and S fertilization in oilseed rape (Brassica napus L.) grown under N- and/or S-limiting supplies?

(2019) Yacine Akmouche et al.   PLANTA

Effect of the Reproduction Method in an Artificial Selection Experiment at the Community Level

(2019) Tiffany Raynaud et al.   Frontiers in Ecology and Evolution

In situ observation of localized, sub-mm scale changes of phosphorus biogeochemistry in the rhizosphere

(2018) Andreas Kreuzeder et al.   PLANT AND SOIL

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipo-chitooligosaccharides promote lateral root formation and modify auxin homeostasis in Brachypodium distachyon

(2018) Luis Buendia et al.   NEW PHYTOLOGIST

Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale

(2017) Johanna Pausch et al.   GLOBAL CHANGE BIOLOGY

A Low-Cost Imaging Method for the Temporal and Spatial Colorimetric Detection of Free Amines on Maize Root Surfaces

(2017) Truc H. Doan et al.   Frontiers in Plant Science

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Bacterial populations in juvenile maize rhizospheres originate from both seed and soil

(2016) David Johnston-Monje et al.   PLANT AND SOIL

Rhizosphere shape of lentil and maize: Spatial distribution of enzyme activities

(2016) Bahar S. Razavi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

(2016) Akitomo Kawasaki et al.   PLoS One

Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity

(2015) Barbara Reinhold-Hurek et al.   Annual Review of Phytopathology

Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility

(2015) Acacio Aparecido Navarrete et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Nicotiana Roots Recruit Rare Rhizosphere Taxa as Major Root-Inhabiting Microbes

(2015) Muhammad Saleem et al.   MICROBIAL ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots acrossBrachypodium distachyonAccessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments

(2015) Vincent Chochois et al.   PLANT PHYSIOLOGY

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Brachypodium: a promising hub between model species and cereals

(2014) Thomas Girin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

(2013) Albert Leopold Müller et al.   ISME Journal

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Rhizosphere wettability decreases with root age: a problem or a strategy to increase water uptake of young roots?

(2013) Andrea Carminati   Frontiers in Plant Science

A standardized method for the sampling of rhizosphere and rhizoplan soil bacteria associated to a herbaceous root system

(2012) Cindy D. C. Barillot et al.   ANNALS OF MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Communities as Experimental Units

(2011) Mitch D. Day et al.   BIOSCIENCE

Colonization of cucumber seeds by bacteria during germination

(2011) Maya Ofek et al.   ENVIRONMENTAL MICROBIOLOGY

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The shoot and root growth of Brachypodium and its potential as a model for wheat and other cereal crops

(2009) Michelle Watt et al.   FUNCTIONAL PLANT BIOLOGY

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL