Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2021-07-06
DOI
10.1093/bioinformatics/btab504
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Pan-cancer analysis of whole genomes
- (2020) NATURE
- Chromosome arm aneuploidies shape tumour evolution and drug response
- (2020) Ankit Shukla et al. Nature Communications
- High levels of chromosomal copy number alterations and TP53 mutations correlate with poor outcome in younger breast cancer patients
- (2020) Ayla Koçak et al. AMERICAN JOURNAL OF PATHOLOGY
- Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL
- (2020) Simone Zaccaria et al. NATURE BIOTECHNOLOGY
- Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data
- (2020) Simone Zaccaria et al. Nature Communications
- Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data
- (2019) Salem Malikic et al. Nature Communications
- Deconvolution and phylogeny inference of structural variations in tumor genomic samples
- (2018) Jesse Eaton et al. BIOINFORMATICS
- Aneuploidy, TP53 mutation, and amplification of MYC correlate with increased intratumor heterogeneity and poor prognosis of breast cancer patients
- (2018) Johanna Oltmann et al. GENES CHROMOSOMES & CANCER
- Genome doubling shapes the evolution and prognosis of advanced cancers
- (2018) Craig M. Bielski et al. NATURE GENETICS
- Beyond sequence variation: assessment of copy number variation in adult glioblastoma through targeted tumor somatic profiling
- (2018) Samantha N. McNulty et al. HUMAN PATHOLOGY
- Whole genome duplication is an early event leading to aneuploidy in IDH-wild type glioblastoma
- (2018) Blandine Boisselier et al. Oncotarget
- The evolution of tumour phylogenetics: principles and practice
- (2017) Russell Schwartz et al. NATURE REVIEWS GENETICS
- Comprehensive molecular characterization of multifocal glioblastoma proves its monoclonal origin and reveals novel insights into clonal evolution and heterogeneity of glioblastomas
- (2017) Khalil Abou-El-Ardat et al. NEURO-ONCOLOGY
- Analysis of gene copy number changes in tumor phylogenetics
- (2016) Jun Zhou et al. Algorithms for Molecular Biology
- Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing
- (2016) Yuchao Jiang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Computational Cancer Biology: An Evolutionary Perspective
- (2016) Niko Beerenwinkel et al. PLoS Computational Biology
- Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures
- (2016) Mohammed El-Kebir et al. Cell Systems
- FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe
- (2016) E. Michael Gertz et al. PLoS One
- Inferring models of multiscale copy number evolution for single-tumor phylogenetics
- (2015) Salim Akhter Chowdhury et al. BIOINFORMATICS
- Comparative genomic and genetic analysis of glioblastoma-derived brain tumor-initiating cells and their parent tumors
- (2015) Brad Davis et al. NEURO-ONCOLOGY
- BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
- (2015) Ke Yuan et al. GENOME BIOLOGY
- Single-Cell Genetic Analysis Reveals Insights into Clonal Development of Prostate Cancers and Indicates Loss of PTEN as a Marker of Poor Prognosis
- (2014) Kerstin M. Heselmeyer-Haddad et al. AMERICAN JOURNAL OF PATHOLOGY
- Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution
- (2014) S. M. Dewhurst et al. Cancer Discovery
- Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics
- (2014) Salim Akhter Chowdhury et al. PLoS Computational Biology
- Phylogenetic Quantification of Intra-tumour Heterogeneity
- (2014) Roland F. Schwarz et al. PLoS Computational Biology
- Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations
- (2013) Salim Akhter Chowdhury et al. BIOINFORMATICS
- Pan-cancer patterns of somatic copy number alteration
- (2013) Travis I Zack et al. NATURE GENETICS
- Single-Cell Genetic Analysis of Ductal Carcinoma in Situ and Invasive Breast Cancer Reveals Enormous Tumor Heterogeneity yet Conserved Genomic Imbalances and Gain of MYC during Progression
- (2012) Kerstin Heselmeyer-Haddad et al. AMERICAN JOURNAL OF PATHOLOGY
- Absolute quantification of somatic DNA alterations in human cancer
- (2012) Scott L Carter et al. NATURE BIOTECHNOLOGY
- Detailed Characterization of Alterations of Chromosomes 7, 9, and 10 in Glioblastomas as Assessed by Single-Nucleotide Polymorphism Arrays
- (2011) Inês Crespo et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Tumour evolution inferred by single-cell sequencing
- (2011) Nicholas Navin et al. NATURE
- Robust unmixing of tumor states in array comparative genomic hybridization data
- (2010) David Tolliver et al. BIOINFORMATICS
- Cancer genome sequencing: a review
- (2009) E. R. Mardis et al. HUMAN MOLECULAR GENETICS
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
- (2008) Roger McLendon et al. NATURE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More