A grass carp model with an antibiotic-disrupted intestinal microbiota

Gut microbiota modulation and immunity response induced by Citrobacter freundii strain GC01 in grass carp (Ctenopharyngodon idellus)

(2020) Fan Xiong et al.   AQUACULTURE

Evidence linking exposure of fish primary macrophages to antibiotics activates the NF-kB pathway

(2020) Wenhui Qiu et al.   ENVIRONMENT INTERNATIONAL

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Haematological and immunological plasma assays and histological study of the grass carp ( Ctenopharyngodon idella) to determine health status

(2020) Lisen Li et al.   AQUACULTURE RESEARCH

Could the gut microbiota community in the coral trout Plectropomus leopardus (Lacepède, 1802) be affected by antibiotic bath administration?

(2020) Xing Zheng et al.   Veterinary Medicine and Science

Benzo[a]pyrene induces microbiome dysbiosis and inflammation in the intestinal tracts of western mosquitofish (Gambusia affinis) and zebrafish (Danio rerio)

(2020) Shaolin Xie et al.   FISH & SHELLFISH IMMUNOLOGY

Nutritional immunity of fish intestines: important insights for sustainable aquaculture

(2020) Mahmoud A.O. Dawood   Reviews in Aquaculture

Clostridium butyricum improves immune responses and remodels the intestinal microbiota of common carp (Cyprinus carpio L.)

(2020) Xiaolin Meng et al.   AQUACULTURE

Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice

(2019) Vienna E. Brunt et al.   JOURNAL OF PHYSIOLOGY-LONDON

Antibiotic use in aquaculture, policies and regulation, health and environmental risks: a review of the top 15 major producers

(2019) Ronald Lulijwa et al.   Reviews in Aquaculture

Antibiotics induced intestinal tight junction barrier dysfunction is associated with microbiota dysbiosis, activated NLRP3 inflammasome and autophagy

(2019) Yanhai Feng et al.   PLoS One

Liver proteome analysis of grass carp (Ctenopharyngodon idellus) following treatment with enrofloxacin

(2019) Rongrong Ma et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Light-entrained and brain-tuned circadian circuits regulate ILC3s and gut homeostasis

(2019) Cristina Godinho-Silva et al.   NATURE

A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome

(2019) Thibault P.R.A. Legrand et al.   Reviews in Aquaculture

Dysbiosis of intestinal microbiota induced by dietary oxidized fish oil and recovery of diet-induced dysbiosis via taurine supplementation in rice field eel (Monopterus albus)

(2019) Mo Peng et al.   AQUACULTURE

Caspase-8 is the molecular switch for apoptosis, necroptosis and pyroptosis

(2019) Melanie Fritsch et al.   NATURE

The impact of antibiotic exposure in water and zebrafish gut microbiomes: A 16S rRNA gene-based metagenomic analysis

(2019) Ana Rita Almeida et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

EPA and DHA attenuate deoxynivalenol‐induced intestinal porcine epithelial cell injury and protect barrier function integrity by inhibiting necroptosis signaling pathway

(2019) Kan Xiao et al.   FASEB JOURNAL

Effects of brewer's yeast hydrolysate on the growth performance and the intestinal bacterial diversity of largemouth bass ( Micropterus salmoides )

(2018) Meng Zhou et al.   AQUACULTURE

Starvation influences the microbiota assembly and expression of immunity-related genes in the intestine of grass carp ( Ctenopharyngodon idellus )

(2018) Ngoc Tuan Tran et al.   AQUACULTURE

Chronic exposure to low environmental concentrations and legal aquaculture doses of antibiotics cause systemic adverse effects in Nile tilapia and provoke differential human health risk

(2018) Samwel M. Limbu et al.   ENVIRONMENT INTERNATIONAL

Polystyrene microplastics induce microbiota dysbiosis and inflammation in the gut of adult zebrafish

(2018) Yuanxiang Jin et al.   ENVIRONMENTAL POLLUTION

Tissue distribution, bioaccumulation characteristics and health risk of antibiotics in cultured fish from a typical aquaculture area

(2018) Hui Chen et al.   JOURNAL OF HAZARDOUS MATERIALS

Bacterial diversity and community structure of the intestinal microbiome of Channel Catfish ( Ictalurus punctatus ) during ontogenesis

(2018) Francisca A. Burgos et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Altered gut microbiota associated with intestinal disease in grass carp (Ctenopharyngodon idellus)

(2018) Ngoc Tuan Tran et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Subchronic toxicity and hepatocyte apoptosis of dietary olaquindox in common carp (Cyprinus carpio)

(2018) Caiyan Ye et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

A Polysaccharide Isolated from Dictyophora indusiata Promotes Recovery from Antibiotic-Driven Intestinal Dysbiosis and Improves Gut Epithelial Barrier Function in a Mouse Model

(2018) Sadia Kanwal et al.   Nutrients

Dietary Bile Salt Types Influence the Composition of Biliary Bile Acids and Gut Microbiota in Grass Carp

(2018) Fan Xiong et al.   Frontiers in Microbiology

Changes in microbiota along the intestine of grass carp (Ctenopharyngodon idella): Community, interspecific interactions, and functions

(2018) Gang Yang et al.   AQUACULTURE

IL23R-protective coding variant promotes beneficial bacteria and diversity in the ileal microbiome in healthy individuals without inflammatory bowel disease

(2018) Martha Zakrzewski et al.   Journal of Crohns & Colitis

Consumption of florfenicol-medicated feed alters the composition of the channel catfish intestinal microbiota including enriching the relative abundance of opportunistic pathogens

(2018) Erlong Wang et al.   AQUACULTURE

Beneficial effects on host energy metabolism of short-chain fatty acids and vitamins produced by commensal and probiotic bacteria

(2017) Jean Guy LeBlanc et al.   Microbial Cell Factories

Weight gain by gut microbiota manipulation in productive animals

(2017) Emmanouil Angelakis   MICROBIAL PATHOGENESIS

Antibiotic growth promoter olaquindox increases pathogen susceptibility in fish by inducing gut microbiota dysbiosis

(2017) Suxu He et al.   Science China-Life Sciences

Host Genetics and Gut Microbiome: Challenges and Perspectives

(2017) Alexander Kurilshikov et al.   TRENDS IN IMMUNOLOGY

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

(2017) Jeanette Carlson et al.   Infection and Drug Resistance

Dietary vitamin C deficiency depresses the growth, head kidney and spleen immunity and structural integrity by regulating NF-κB, TOR, Nrf2, apoptosis and MLCK signaling in young grass carp (Ctenopharyngodon idella)

(2016) Hui-Jun Xu et al.   FISH & SHELLFISH IMMUNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Epithelial IL-23R Signaling Licenses Protective IL-22 Responses in Intestinal Inflammation

(2016) Konrad Aden et al.   Cell Reports

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Dietary administration of the probiotic SpPdp11: Effects on the intestinal microbiota and immune-related gene expression of farmed Solea senegalensis treated with oxytetracycline

(2015) S.T. Tapia-Paniagua et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of interleukin-1β as a proinflammatory cytokine in grass carp (Ctenopharyngodon idella)

(2015) Yun-Xuan Bo et al.   FISH & SHELLFISH IMMUNOLOGY

Differential Roles for Interleukin-23 and Interleukin-17 in Intestinal Immunoregulation

(2015) Joseph R. Maxwell et al.   IMMUNITY

Implications of microbiota and bile acid in liver injury and regeneration

(2015) Hui-Xin Liu et al.   JOURNAL OF HEPATOLOGY

The Treg/Th17 Axis: A Dynamic Balance Regulated by the Gut Microbiome

(2015) Sara Omenetti et al.   Frontiers in Immunology

Antibiotic Treatment Affects Intestinal Permeability and Gut Microbial Composition in Wistar Rats Dependent on Antibiotic Class

(2015) Monica Vera-Lise Tulstrup et al.   PLoS One

Diversity of autochthonous bacterial communities in the intestinal mucosa of grass carp (Ctenopharyngodon idellus) (Valenciennes) determined by culture-dependent and culture-independent techniques

(2014) Huan Li et al.   AQUACULTURE RESEARCH

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing

(2014) Tongtong Li et al.   MICROBIAL ECOLOGY

Homeostatic IL-23 receptor signaling limits Th17 response through IL-22-mediated containment of commensal microbiota

(2014) V. F.-S. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Factors influencing the grass carp gut microbiome and its effect on metabolism

(2013) Jiajia Ni et al.   FEMS MICROBIOLOGY ECOLOGY

Tight junctions on the move: molecular mechanisms for epithelial barrier regulation

(2012) Le Shen   Annals of the New York Academy of Sciences

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Antibiotics, microbiota, and immune defense

(2012) Carles Ubeda et al.   TRENDS IN IMMUNOLOGY

Microbiotal influence on T cell subset development

(2011) Koji Atarashi et al.   SEMINARS IN IMMUNOLOGY

Effects of dietary antibiotic growth promoter and Saccharomyces cerevisiae fermentation product on production, intestinal bacterial community, and nonspecific immunity of hybrid tilapia (Oreochromis niloticus female × Oreochromis aureus male)1

(2010) S. He et al.   JOURNAL OF ANIMAL SCIENCE

MLCK-dependent exchange and actin binding region-dependent anchoring of ZO-1 regulate tight junction barrier function

(2010) D. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA