The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger

Artificial AmyR::XlnR transcription factor induces α-amylase production in response to non-edible xylan-containing hemicellulosic biomass

(2021) Miharu Yamashita et al.   ENZYME AND MICROBIAL TECHNOLOGY

CRISPR/Cas9 facilitates rapid generation of constitutive forms of transcription factors in Aspergillus niger through specific on-site genomic mutations resulting in increased saccharification of plant biomass

(2020) Roland S. Kun et al.   ENZYME AND MICROBIAL TECHNOLOGY

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Improved mycelia and polysaccharide production of Grifola frondosa by controlling morphology with microparticle Talc

(2018) Ting-Lei Tao et al.   Microbial Cell Factories

Efficient genome editing using tRNA promoter-driven CRISPR/Cas9 gRNA in Aspergillus niger

(2018) Letian Song et al.   PLoS One

DeepCoil – a fast and accurate prediction of coiled-coil domains in protein sequences

(2018) Jan Ludwiczak et al.   BIOINFORMATICS

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger

(2017) Joanna E. Kowalczyk et al.   ENVIRONMENTAL MICROBIOLOGY

The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger

(2017) Ebru Alazi et al.   FEBS LETTERS

Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis

(2017) Miia R. Mäkelä et al.   New Biotechnology

Constitutive Expression of Chimeric Transcription Factors Enables Cellulase Synthesis under Non-Inducing Conditions in Penicillium oxalicum

(2017) Liwei Gao et al.   Biotechnology Journal

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin

(2017) Joanna E. Kowalczyk et al.   Scientific Reports

Enhanced cellulase production fromTrichoderma reeseiRut-C30 by engineering with an artificial zinc finger protein library

(2016) Fei Zhang et al.   Biotechnology Journal

The transcriptional activator GaaR ofAspergillus nigeris required for release and utilization ofd-galacturonic acid from pectin

(2016) Ebru Alazi et al.   FEBS LETTERS

Enhanced cellulase production fromTrichoderma reeseiRut-C30 by engineering with an artificial zinc finger protein library

(2016) Fei Zhang et al.   Biotechnology Journal

The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger

(2016) Roxane Raulo et al.   AMB Express

The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger

(2015) Jing Niu et al.   FUNGAL GENETICS AND BIOLOGY

Rational design of highly active sgRNAs for CRISPR-Cas9–mediated gene inactivation

(2014) John G Doench et al.   NATURE BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics

(2009) Elena S. Martens-Uzunova et al.   FUNGAL GENETICS AND BIOLOGY