4.8 Article

Development and Application of Liquid Chromatographic Retention Time Indices in HRMS-Based Suspect and Nontarget Screening

Journal

ANALYTICAL CHEMISTRY
Volume 93, Issue 33, Pages 11601-11611

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.analchem.1c02348

Keywords

-

Funding

  1. NORMAN Association
  2. Hellenic Foundation for Research and Innovation (HFRI)
  3. General Secretariat for Research and Technology (GSRT) under the HFRI Ph.D. Fellowship grant [14484]
  4. Luxembourg National Research Fund (FNR) [A18/BM/12341006]

Ask authors/readers for more resources

This study proposed a unified retention time index (RTI) approach for liquid chromatography, aiming to achieve comparable retention times among different laboratories. By calibrating the elution pattern with two sets of calibration compounds, the RTI range was set between 1 and 1000, which was considered the most appropriate RTI system after rigorous evaluation.
There is an increasing need for comparable and harmonized retention times (t(R) ) in liquid chromatography (LC) among different laboratories, to provide supplementary evidence for the identity of compounds in high-resolution mass spectrometry (HRMS)-based suspect and nontarget screening investigations. In this study, a rigorously tested, flexible, and less system-dependent unified retention time index (RTI) approach for LC is presented, based on the calibration of the elution pattern. Two sets of 18 calibrants were selected for each of ESI+ and ESI-based on the maximum overlap with the retention times and chemical similarity indices from a total set of 2123 compounds. The resulting calibration set, with RTI set to range between 1 and 1000, was proposed as the most appropriate RTI system after rigorous evaluation, coordinated by the NORMAN network. The validation of the proposed RTI system was done externally on different instrumentation and LC conditions. The RTI can also be used to check the reproducibility and quality of LC conditions. Two quantitative structure-retention relationship (QSRR)-based models were built based on the developed RTI systems, which assist in the removal of false-positive annotations. The applicability domains of the QSRR models allowed completing the identification process with higher confidence for substances within the domain, while indicating those substances for which results should be treated with caution. The proposed RTI system was used to improve confidence in suspect and nontarget screening and increase the comparability between laboratories as demonstrated for two examples.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Environmental Sciences

Advanced throughput analytical strategies for the comprehensive HRMS screening of organic micropollutants in eggs of different bird species

Georgios Gkotsis, Maria-Christina Nika, Antonia Athanasopoulou, Konstantinos Vasilatos, Nikiforos Alygizakis, Martin Boschert, Raphaela Osterauer, Kai-Achim Hoepker, Nikolaos S. Thomaidis

Summary: This study analyzed 26 eggs of 4 bird species collected in Germany, and identified 58 different chemical pollutants, including plant protection products, per- and polyfluoroalkyl substances, medicinal products, and their transformation products. Additional 50 substances were also identified through suspect screening workflows, mainly compounds of industrial use. The results highlight the use of raptors as indicators for biomonitoring studies to assess environmental pollution in the terrestrial ecosystem.

CHEMOSPHERE (2023)

Article Genetics & Heredity

In situ detection of the genotoxic potential as one of the lines of evidence in the weight-of-evidence approach-the Joint Danube Survey 4 Case Study

Jovana Jovanovic Maric, Stoimir Kolarevic, Jelena Dordevic, Karolina Sunjog, Ivan Nikolic, Ana Maric, Marija Ilic, Predrag Simonovic, Nikiforos Alygizakis, Kelsey Ng, Peter Oswald, Jaroslav Slobodnik, Bojana Zegura, Branka Vukovic-Gacic, Momir Paunovic, Margareta Kracun-Kolarevic

Summary: This study demonstrates the importance of employing a complex weight-of-evidence approach in environmental studies to accurately assess the impact of pollution on ecological systems. The use of multiple lines of evidence ensures that the full extent of pollution effects is considered.

MUTAGENESIS (2023)

Article Biochemical Research Methods

High-throughput Saccharomyces cerevisiae cultivation method for credentialing-based untargeted metabolomics

Lorenzo Favilli, Corey M. Griffith, Emma L. Schymanski, Carole L. Linster

Summary: Identifying metabolites in model organisms is critical for understanding biology. Stable isotope labelling is a useful strategy for distinguishing biologically relevant features from background signals. Researchers developed a high-throughput metabolomics approach using stable isotope labelling, resulting in the successful annotation of 198 metabolites.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2023)

Article Environmental Sciences

The importance of in-year seasonal fluctuations for biomonitoring of apex predators: A case study of 14 essential and non-essential elements in the liver of the common buzzard (Buteo buteo) in the United Kingdom

Shinji Ozaki, Paola Movalli, Alessandra Cincinelli, Nikiforos Alygizakis, Alexander Badry, Jacqueline S. Chaplow, Daniela Classen, Rene W. R. J. Dekker, Beverley Dodd, Guy Duke, Jan Koschorreck, M. Gloria Pereira, Elaine Potter, Jaroslav Slobodnik, Sarah Thacker, Nikolaos S. Thomaidis, Gabriele Treu, Lee Walker

Summary: This study measured the concentrations of 14 trace elements in the livers of common buzzards collected in the UK from 2001 to 2019 and examined whether concentrations changed over time. The study found that most buzzards had lower hepatic concentrations of harmful elements compared to the biological significance level. Certain elements showed marked seasonal variation within years, and lead consistently increased over time while strontium showed a decreasing trend. The concentrations of cadmium, mercury, and chromium increased with age, and selenium and chromium were influenced by sex. Arsenic and chromium concentrations also varied between regions. Overall, there was a low risk of harmful effects of most elements in the buzzards.

ENVIRONMENTAL POLLUTION (2023)

Article Engineering, Environmental

Contamination Pattern and Risk Assessment of Polar Compounds in Snow Melt: An Integrative Proxy of Road Runoffs

Loic Maurer, Eric Carmona, Oliver Machate, Tobias Schulze, Martin Krauss, Werner Brack

Summary: The study assessed the contamination and risk of snow melt in Leipzig by analyzing snow samples and wastewater samples. Various pollutants, including traffic-related compounds and toxic substances for fish, were detected. The wastewater treatment plant was able to remove some pollutants, but others still persisted.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2023)

Article Cardiac & Cardiovascular Systems

Impact of drinking water hardness on carotid atherosclerosis and arterial stiffness: Insights from the Corinthia study

Georgia Vogiatzi, George Lazaros, Evangelos Oikonomou, Marios Kostakis, Zacharenia Kypritidou, Evangelia Christoforatou, Panagiotis Theofilis, Ariadne Argyraki, Nikolaos Thomaidis, Dimitris Tousoulis

Summary: This study investigated the effects of drinking water hardness on carotid atherosclerotic burden and arterial stiffness. The results showed that individuals living in areas with lower water hardness had lower risk of carotid atherosclerotic burden and plaque formation. However, the association with arterial stiffness remains uncertain and further research is needed.

HELLENIC JOURNAL OF CARDIOLOGY (2023)

Article Engineering, Civil

Particle-associated organic contaminant and cytotoxicity transport in a river during storm events

Clarissa Glaser, Beate I. Escher, Michelle Engelhardt, Yuyuan Liu, Martin Krauss, Maria Konig, Rita Schlichting, Christiane Zarfl, Stephanie Spahr

Summary: Storm events result in the movement of particles and organic contaminants in rivers, posing a risk to river ecosystems. Assessing the total loads of particle-bound and dissolved contaminants during rain events is challenging due to multiple contamination sources. In this study, cytotoxicity was used as a proxy to evaluate the transport of organic contaminant mixtures in different forms. Samples were collected during storm events in the Ammer River, and the results showed a linear correlation between total suspended solids (TSS) and cytotoxicity. A threshold value of 0.5 g L-1 TSS was derived to indicate the significance of particle-facilitated contaminant transport.

JOURNAL OF HYDROLOGY (2023)

Article Chemistry, Multidisciplinary

Development and Validation of an HPLC-UV Method for the Determination Bis(2-ethylhexyl) Phthalate Ester in Alcoholic Beverages

Evangelos G. Gemenetzis, Nikiforos A. Alygizakis

Summary: An HPLC method with a UV detector was developed to determine the DEHP phthalate ester in Ouzo alcoholic beverage. Phthalate esters are added to plastic packaging for food and beverages, leading to the migration of phthalate residues into the product. The method involves sample extraction with hexane and phthalates separation by HPLC, which was validated for various parameters.

APPLIED SCIENCES-BASEL (2023)

Article Environmental Sciences

A data-derived reference mixture representative of European wastewater treatment plant effluents to complement mixture assessment

Liza-Marie Beckers, Rolf Altenburger, Werner Brack, Beate I. Escher, Jorg Hackermueller, Enken Hassold, Gianina Illing, Martin Krauss, Janet Krueger, Paul Michaelis, Andreas Schuettler, Sarah Stevens, Wibke Busch

Summary: Aquatic environments are polluted with a wide range of organic micropollutants, posing challenges for risk assessment due to the complexity and diversity of pollutant mixtures. This study suggests that investigating source-specific background pollution in aquatic environments could be a way to approach mixture risk assessment. By preparing a representative mixture of organic micropollutants and comparing it with predicted mixture effects, the study demonstrates that this approach can help identify substances that should be considered in future monitoring efforts and provide measures to estimate wastewater background concentrations and assess mixture risks. The study highlights data gaps that should be addressed for prioritization of effect testing, and offers the approach and mixture for further investigations by authorities and scientists.

ENVIRONMENT INTERNATIONAL (2023)

Article Chemistry, Applied

Complete chemical characterization of Crocus sativus via LC-HRMS: Does trimming affect the chemical content of saffron?

Anthi Panara, Evagelos Gikas, Nikolaos S. Thomaidis

Summary: Chemical characterization of six different trims of saffron was conducted using LC-QToF-MS. A total of 62 compounds were identified, including amino acids, vitamins, flavonoids, phenolics, carotenoids, and cyclohexenones. Multivariate Chemometrics techniques successfully discriminated between red trims (Pushal, Sargol and Negin) and between Style and Bunch. Proline and isophorone were highlighted as authenticity markers. The effect of three harvesting years on the most contributing compounds for trimming discrimination was evaluated.

FOOD CHEMISTRY (2023)

Article Engineering, Environmental

The impact of amine and carboxyl functionalised microplastics on the physiology of daphnids

Konstantinos Panagiotidis, Beatrice Engelmann, Martin Krauss, Ulrike E. Rolle-Kampczyk, Rolf Altenburger, Keith D. Rochfort, Konstantinos Grintzalis

Summary: Plastic waste poses a significant threat to terrestrial, marine, and freshwater ecosystems. The ingestion of microplastic particles resulting from plastic degradation can have serious health effects on organisms. This study investigated the effect of amine and carboxy functionalized polystyrene microparticles on the physiology of daphnids. The findings suggest that these microparticles can hinder organism performance and highlight the importance of using holistic and physiological endpoints for pollution assessment.

JOURNAL OF HAZARDOUS MATERIALS (2023)

Article Fisheries

Preliminary measurements of formaldehyde in seawater and edible tissues of farmed gilthead seabream after formalin immersion

M. Kotsiri, A. Panara, A. Koupa, E. Gourzioti, N. s. Thomaidis, G. Rigos

Summary: This study aimed to determine the persistence of formaldehyde in seawater and gilthead seabream tissues after a formalin bath. Water and tissue samples were collected and analyzed using chromatographic techniques. The results showed that there was no increase in formaldehyde concentration in the fish fillets after immersion, and only negligible amounts of formaldehyde remained in the seawater. Further research is needed to investigate the degradation cycle of formaldehyde under Mediterranean seawater conditions.

MEDITERRANEAN MARINE SCIENCE (2023)

Article Chemistry, Analytical

Adding open spectral data to MassBank and PubChem using open source tools to support non-targeted exposomics of mixtures

Anjana Elapavalore, Todor Kondic, Randolph R. Singh, Benjamin A. Shoemaker, Paul A. Thiessen, Jian Zhang, Evan E. Bolton, Emma L. Schymanski

Summary: The exposome is a comprehensive study of life-course environmental exposures and associated biological responses. Humans are exposed to various chemicals, posing a major threat to human well-being. Mass spectrometry techniques, targeted or non-targeted, are commonly used to identify and characterize environmental stressors. However, identifying chemicals in exposomics studies remains challenging due to the large chemical space and insufficient entries in spectral libraries.

ENVIRONMENTAL SCIENCE-PROCESSES & IMPACTS (2023)

Article Environmental Sciences

Non-target screening of surface water samples to identify exposome-related pollutants: a case study from Luxembourg

Dagny Aurich, Philippe Diderich, Rick Helmus, Emma L. Schymanski

Summary: This study analyzed surface water samples from 20 sampling sites across Luxembourg using high-resolution mass spectrometry, and tentatively identified 378 compounds associated with exposome. The analysis revealed temporal variations in agrochemicals and the prevalence of pharmaceuticals in surface waters. The study also explored potential sources of pollutants based on common uses and geographical information. 41 chemicals were suggested for potential inclusion in governmental monitoring lists for further investigation.

ENVIRONMENTAL SCIENCES EUROPE (2023)

Article Chemistry, Applied

Untargeted 4D-metabolomics using Trapped Ion Mobility combined with LC-HRMS in extra virgin olive oil adulteration study with lower-quality olive oils

Sofia K. Drakopoulou, Anastasia S. Kritikou, Carsten Baessmann, Nikolaos S. Thomaidis

Summary: This study explores the potential of LC-TIMS-HRMS as a reliable analytical platform for authenticity studies and applied it in the adulteration study of extra virgin olive oil (EVOO). Using an integrated untargeted 4D-metabolomics approach, the study successfully built robust prediction models that could discriminate between authentic EVOOs and adulterated ones, while also identifying specific markers for each group. The addition of TIMS in the LC-HRMS workflow significantly increased the metabolic coverage and enabled the detection of adulteration down to 1%.

FOOD CHEMISTRY (2024)

No Data Available