Diversity and N2O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone

Biogeochemistry and hydrography shape microbial community assembly and activity in the eastern tropical North Pacific Ocean oxygen minimum zone

(2020) J.M. Beman et al.   ENVIRONMENTAL MICROBIOLOGY

Fungi in the Marine Environment: Open Questions and Unsolved Problems

(2019) Anthony Amend et al.   mBio

Fungi in aquatic ecosystems

(2019) Hans-Peter Grossart et al.   NATURE REVIEWS MICROBIOLOGY

Global diversity and geography of planktonic marine fungi

(2019) Brandon T. Hassett et al.   BOTANICA MARINA

Anaerobic methane oxidation is an important sink for methane in the ocean's largest oxygen minimum zone

(2019) Bo Thamdrup et al.   LIMNOLOGY AND OCEANOGRAPHY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

An automated, laser‐based measurement system for nitrous oxide isotope and isotopomer ratios at nanomolar levels

(2019) Qixing Ji et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Nutrient Enrichment Alters Salt Marsh Fungal Communities and Promotes Putative Fungal Denitrifiers

(2018) Patrick J. Kearns et al.   MICROBIAL ECOLOGY

Genomics and Ecology of Novel N 2 O-Reducing Microorganisms

(2018) Sara Hallin et al.   TRENDS IN MICROBIOLOGY

Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria

(2018) Cameron M. Callbeck et al.   Nature Communications

Phylogenomics Reveal the Dynamic Evolution of Fungal Nitric Oxide Reductases and Their Relationship to Secondary Metabolism

(2018) Steven A Higgins et al.   Genome Biology and Evolution

Cryptic oxygen cycling in anoxic marine zones

(2017) Emilio Garcia-Robledo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for fungal and chemodenitrification based N2O flux from nitrogen impacted coastal sediments

(2017) Scott D. Wankel et al.   Nature Communications

Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone

(2017) Clara A. Fuchsman et al.   Frontiers in Microbiology

Fungal parasites infect marine diatoms in the upwelling ecosystem of the Humboldt current system off central Chile

(2016) Marcelo H. Gutiérrez et al.   ENVIRONMENTAL MICROBIOLOGY

Chytrids dominate arctic marine fungal communities

(2016) B. T. Hassett et al.   ENVIRONMENTAL MICROBIOLOGY

Partitioning of fungal assemblages across different marine habitats

(2016) Thomas Charles Jeffries et al.   Environmental Microbiology Reports

Ammonia and nitrite oxidation in the Eastern Tropical North Pacific

(2015) Xuefeng Peng et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

N2O production, a widespread trait in fungi

(2015) Koki Maeda et al.   Scientific Reports

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

(2015) Jennifer B. Glass et al.   Frontiers in Microbiology

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea

(2014) Peter Stief et al.   BMC MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Oxygen at Nanomolar Levels Reversibly Suppresses Process Rates and Gene Expression in Anammox and Denitrification in the Oxygen Minimum Zone off Northern Chile

(2014) Tage Dalsgaard et al.   mBio

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile

(2014) Darren J. Parris et al.   Frontiers in Microbiology

Microbial oceanography of anoxic oxygen minimum zones

(2012) O. Ulloa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

An Extracellular S1-Type Nuclease of Marine Fungus Penicillium melinii

(2011) Larissa A. Balabanova et al.   MARINE BIOTECHNOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The role of fungi in processing marine organic matter in the upwelling ecosystem off Chile

(2010) M. H. Gutiérrez et al.   MARINE BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Redefinition of Aureobasidium pullulans and its varieties

(2010) P. Zalar et al.   STUDIES IN MYCOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

Oxygen minimum zones (OMZs) in the modern ocean

(2008) A. Paulmier et al.   PROGRESS IN OCEANOGRAPHY

Anaerobic denitrification in fungi from the coastal marine sediments off Goa, India

(2008) Sumathi J. Cathrine et al.