Genome-Wide Mapping of Histone H3 Lysine 4 Trimethylation (H3K4me3) and Its Involvement in Fatty Acid Biosynthesis in Sunflower Developing Seeds

Molecular Basis of Plant Oil Biosynthesis: Insights Gained From Studying the WRINKLED1 Transcription Factor

(2020) Que Kong et al.   Frontiers in Plant Science

Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification

(2019) José M. Santos-Pereira et al.   Nature Communications

WRINKLED1, a “Master Regulator” in Transcriptional Control of Plant Oil Biosynthesis

(2019) Que Kong et al.   Plants-Basel

Genetic manipulation of ABI 3 confers frost‐tolerant seed degreening in canola

(2019) Mendel Perkins et al.   PLANT BIOTECHNOLOGY JOURNAL

Splice Variants of the Castor WRI1 Gene Upregulate Fatty Acid and Oil Biosynthesis When Expressed in Tobacco Leaves

(2018) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gene network of oil accumulation reveals expression profiles in developing embryos and fatty acid composition in Upland cotton

(2018) Yanpeng Zhao et al.   JOURNAL OF PLANT PHYSIOLOGY

Development of an efficient chromatin immunoprecipitation method to investigate protein-DNA interaction in oleaginous castor bean seeds

(2018) Mohammad Enamul Haque et al.   PLoS One

Seeds as oil factories

(2018) Sébastien Baud   Plant Reproduction

Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development

(2018) L. Lepiniec et al.   Plant Reproduction

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Expression of Camelina WRINKLED1 Isoforms Rescue the Seed Phenotype of the Arabidopsis wri1 Mutant and Increase the Triacylglycerol Content in Tobacco Leaves

(2017) Dahee An et al.   Frontiers in Plant Science

Histone acetyltransferase general control non-repressed protein 5 (GCN5) affects the fatty acid composition ofArabidopsis thalianaseeds by acetylatingfatty acid desaturase3(FAD3)

(2016) Tianya Wang et al.   PLANT JOURNAL

CURLY LEAFRegulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis

(2016) Jun Liu et al.   PLANT PHYSIOLOGY

Deciphering and modifying LAFL transcriptional regulatory network in seed for improving yield and quality of storage compounds

(2016) Abdelhak Fatihi et al.   PLANT SCIENCE

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Complementation of Seed Maturation Phenotypes by Ectopic Expression of ABSCISIC ACID INSENSITIVE3, FUSCA3 and LEAFY COTYLEDON2 in Arabidopsis

(2015) Thomas T. Roscoe et al.   PLANT AND CELL PHYSIOLOGY

Gene silencing of Sugar-dependent 1 (JcSDP1), encoding a patatin-domain triacylglycerol lipase, enhances seed oil accumulation in Jatropha curcas

(2014) Mi Kim et al.   Biotechnology for Biofuels

HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data

(2014) Huihuang Yan et al.   BMC BIOINFORMATICS

Transcriptional regulation of fatty acid production in higher plants: Molecular bases and biotechnological outcomes

(2014) Chloé Marchive et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

New insights on the evolution of Leafy cotyledon1 (LEC1) type genes in vascular plants

(2014) Alexandro Cagliari et al.   GENOMICS

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

MYB118 Represses Endosperm Maturation in Seeds of Arabidopsis

(2014) G. Barthole et al.   PLANT CELL

Biochemistry of high stearic sunflower, a new source of saturated fats

(2014) Joaquín J. Salas et al.   PROGRESS IN LIPID RESEARCH

Arabidopsis AL PHD-PRC1 Complexes Promote Seed Germination through H3K4me3-to-H3K27me3 Chromatin State Switch in Repression of Seed Developmental Genes

(2014) Anne Marie Molitor et al.   PLoS Genetics

Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica

(2013) Zhou Du et al.   Molecular Plant

Histone Lysine Demethylases and Their Functions in Plants

(2013) Ming Luo et al.   PLANT MOLECULAR BIOLOGY REPORTER

Large-Scale Quality Analysis of Published ChIP-seq Data

(2013) Georgi K. Marinov et al.   G3-Genes Genomes Genetics

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Evolutionarily Conserved Histone Methylation Dynamics during Seed Life-Cycle Transitions

(2012) Kerstin Müller et al.   PLoS One

Coordinated histone modifications are associated with gene expression variation within and between species

(2011) M. Ha et al.   GENOME RESEARCH

Comparative deep transcriptional profiling of four developing oilseeds

(2011) Manuel A. Troncoso-Ponce et al.   PLANT JOURNAL

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Charting histone modifications and the functional organization of mammalian genomes

(2010) Vicky W. Zhou et al.   NATURE REVIEWS GENETICS

Acyl-ACP thioesterases from macadamia (Macadamia tetraphylla) nuts: Cloning, characterization and their impact on oil composition

(2010) Antonio J. Moreno-Pérez et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15

(2009) Y. Zheng et al.   PLANT CELL

An AP2-type transcription factor, WRINKLED1, ofArabidopsis thalianabinds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis

(2009) Kenichiro Maeo et al.   PLANT JOURNAL

Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus

(2009) Jing Liu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Combinatorial patterns of histone acetylations and methylations in the human genome

(2008) Zhibin Wang et al.   NATURE GENETICS

Genome-wide approaches to studying chromatin modifications

(2008) Dustin E. Schones et al.   NATURE REVIEWS GENETICS

Transcriptional Regulation of Storage Protein Synthesis During Dicotyledon Seed Filling

(2008) J. Verdier et al.   PLANT AND CELL PHYSIOLOGY

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression

(2008) X. Li et al.   PLANT CELL

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis

(2008) Monica Santos-Mendoza et al.   PLANT JOURNAL

Regulation of de novo fatty acid synthesis in maturing oilseeds of Arabidopsis

(2008) Sébastien Baud et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

LECs go crazy in embryo development

(2008) S BRAYBROOK et al.   TRENDS IN PLANT SCIENCE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY