Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan

Exploring novel bacterial terpene synthases

(2020) Gajendar Komati Reddy et al.   PLoS One

Mining the Yucatan Coastal Microbiome for the Identification of Non-Ribosomal Peptides Synthetase (NRPS) Genes

(2020) Mario Alberto Martínez-Núñez et al.   Toxins

The Controversial Role of Human Gut Lachnospiraceae

(2020) Mirco Vacca et al.   Microorganisms

Shotgun metagenomics reveals a heterogeneous prokaryotic community and a wide array of antibiotic resistance genes in mangrove sediment

(2020) Madangchanok Imchen et al.   FEMS MICROBIOLOGY ECOLOGY

Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair

(2020) Mohak Sharda et al.   Genome Biology and Evolution

Community assembly of bacteria and archaea in coastal waters governed by contrasting mechanisms: A seasonal perspective

(2020) Kai Wang et al.   MOLECULAR ECOLOGY

Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds

(2020) Shuilin Liao et al.   mSystems

Characterization of sediment microbial communities at two sites with low hydrocarbon pollution in the southeast Gulf of Mexico

(2020) Pablo Suárez-Moo et al.   PeerJ

Insights into the role of bacteria in vitamin A biosynthesis: Future research opportunities

(2019) K. Srinivasan et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Diversity and shifts of the bacterial community associated with Baikal sponge mass mortalities

(2019) Sergei Belikov et al.   PLoS One

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California

(2019) Sabah Ul-Hasan et al.   PLoS One

Influence of salinity on the degradation of xenobiotic compounds in rhizospheric mangrove soil

(2019) Andrea Muñoz-García et al.   ENVIRONMENTAL POLLUTION

Pentachlorophenol alters the acetate-assimilating microbial community and redox cycling in anoxic soils

(2019) Yan Xu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Terpene Synthase Genes Originated from Bacteria through Horizontal Gene Transfer Contribute to Terpenoid Diversity in Fungi

(2019) Qidong Jia et al.   Scientific Reports

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge

(2019) Lachlan B. M. Speirs et al.   Frontiers in Microbiology

Genome-Centered Metagenomics Analysis Reveals the Microbial Interactions of a Syntrophic Consortium during Methane Generation in a Decentralized Wastewater Treatment System

(2019) Kun Zhang et al.   Applied Sciences-Basel

Kinetics of atmospheric reactions of 4-chloro-1-butene

(2018) Jianqiang Zhu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Novel prosthecate bacteria from the candidate phylum Acetothermia

(2018) Liping Hao et al.   ISME Journal

Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples

(2018) Guillaume Tahon et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Community Structure, Dynamics and Interactions of Bacteria, Archaea and Fungi in Subtropical Coastal Wetland Sediments

(2018) Man Kit Cheung et al.   Scientific Reports

Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as Amendment

(2018) Bruna Matturro et al.   Frontiers in Microbiology

Taxonomic diversity of bacteria from mangrove sediments of Goa: metagenomic and functional analysis

(2018) Shyamalina Haldar et al.   3 Biotech

Cadaver Thanatomicrobiome Signatures: The Ubiquitous Nature of Clostridium Species in Human Decomposition

(2017) Gulnaz T. Javan et al.   Frontiers in Microbiology

Bacterial communities inhabiting toxic industrial wastewater generated during nitrocellulose production

(2016) Elvira E. Ziganshina et al.   BIOLOGIA

Microbial Community Composition in the Marine Sediments of Jeju Island: Next-Generation Sequencing Surveys

(2016) Heebok Choi et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Editorial: Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments

(2016) Maurizio Labbate et al.   Frontiers in Microbiology

Bacterial Communities in the Rhizospheres of Three Mangrove Tree Species from Beilun Estuary, China

(2016) Peng Wu et al.   PLoS One

Biochemical properties of retinoid-converting enzymes and biotechnological production of retinoids

(2015) Seung-Hye Hong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Prolixibacter denitrificans sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolixibacter and Prolixibacter bellariivorans

(2015) Takao Iino et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diversity and Distribution of Archaea in the Mangrove Sediment of Sundarbans

(2015) Anish Bhattacharyya et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Nitrification kinetics and ammonia-oxidizing community respond to warming and altered precipitation

(2015) D. S. Novem Auyeung et al.   Ecosphere

A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data

(2015) Stefan Spring et al.   Frontiers in Microbiology

Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)

(2015) Grazia Marina Quero et al.   Frontiers in Microbiology

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)

(2015) Noha H. Youssef et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Terpene synthases are widely distributed in bacteria

(2014) Yuuki Yamada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salinibacter: an extremely halophilic bacterium with archaeal properties

(2013) Aharon Oren   FEMS MICROBIOLOGY LETTERS

Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland

(2013) Xiao-Tao Jiang et al.   MICROBIAL ECOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Bacterial Degradation of Benzoate

(2012) J. Andrés Valderrama et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial communities are sensitive indicators of contaminant stress

(2012) Melanie Y. Sun et al.   MARINE POLLUTION BULLETIN

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

(2012) Fernando Dini Andreote et al.   PLoS One

Review: The Yucatán Peninsula karst aquifer, Mexico

(2011) Peter Bauer-Gottwein et al.   HYDROGEOLOGY JOURNAL

Retinoid production using metabolically engineered Escherichia coli with a two-phase culture system

(2011) Hui-Jeong Jang et al.   Microbial Cell Factories

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Vitamin B6 biosynthesis is essential for survival and virulence of Mycobacterium tuberculosis

(2010) Thomas Dick et al.   MOLECULAR MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Characterization of a silent sesquiterpenoid biosynthetic pathway in Streptomyces avermitilis controlling epi-isozizaene albaflavenone biosynthesis and isolation of a new oxidized epi-isozizaene metabolite

(2010) Satoshi Takamatsu et al.   Microbial Biotechnology

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Identification of Sesquiterpene Synthases from Nostoc punctiforme PCC 73102 and Nostoc sp. Strain PCC 7120

(2008) S. A. Agger et al.   JOURNAL OF BACTERIOLOGY

Thematic Review Series: Glycerolipids.Acyltransferases in bacterial glycerophospholipid synthesis

(2008) Yong-Mei Zhang et al.   JOURNAL OF LIPID RESEARCH