Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Authors
Keywords
-
Journal
Microbiome
Volume 9, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-04-29
DOI
10.1186/s40168-021-01048-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
- (2020) Patrick Denis Browne et al. GigaScience
- A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
- (2020) Jacob T. Barlow et al. Nature Communications
- Gut microbiota modulation: a novel strategy for prevention and treatment of colorectal cancer
- (2020) Winnie Fong et al. ONCOGENE
- Assessment of fecal DNA extraction protocols for metagenomic studies
- (2020) Fangming Yang et al. GigaScience
- Developing standards for the microbiome field
- (2020) Gregory C. A. Amos et al. Microbiome
- Multicenter assessment of microbial community profiling using 16S rRNA gene sequencing and shotgun metagenomic sequencing
- (2020) Dongsheng Han et al. Journal of Advanced Research
- Microbial abundance, activity and population genomic profiling with mOTUs2
- (2019) Alessio Milanese et al. Nature Communications
- Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
- (2019) Mitsuhiko P Sato et al. DNA RESEARCH
- Benchmarking Metagenomics Tools for Taxonomic Classification
- (2019) Simon H. Ye et al. CELL
- Human faecal collection methods demonstrate a bias in microbiome composition by cell wall structure
- (2019) Emma-Jane Watson et al. Scientific Reports
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- The Human Gut Microbiome: From Association to Modulation
- (2018) Thomas S.B. Schmidt et al. CELL
- Differences in gut microbiota associated with age, sex, and stool consistency in healthy Japanese subjects
- (2018) Tomohisa Takagi et al. JOURNAL OF GASTROENTEROLOGY
- Current understanding of the human microbiome
- (2018) Jack A Gilbert et al. NATURE MEDICINE
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Comparison of DNA extraction methods for human gut microbial community profiling
- (2018) Mi Young Lim et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
- (2017) Rashmi Sinha et al. NATURE BIOTECHNOLOGY
- Towards standards for human fecal sample processing in metagenomic studies
- (2017) Paul I Costea et al. NATURE BIOTECHNOLOGY
- Microbiome Datasets Are Compositional: And This Is Not Optional
- (2017) Gregory B. Gloor et al. Frontiers in Microbiology
- Optimizing methods and dodging pitfalls in microbiome research
- (2017) Dorothy Kim et al. Microbiome
- A method for assessing efficiency of bacterial cell disruption and DNA release
- (2016) Olle M. de Bruin et al. BMC MICROBIOLOGY
- The gut microbiome of healthy Japanese and its microbial and functional uniqueness
- (2016) Suguru Nishijima et al. DNA RESEARCH
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- An assessment of US microbiome research
- (2016) Elizabeth Stulberg et al. Nature Microbiology
- Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis
- (2016) Adam G. Clooney et al. PLoS One
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- The gut microbiome in health and in disease
- (2015) Andrew B. Shreiner et al. CURRENT OPINION IN GASTROENTEROLOGY
- Library preparation methodology can influence genomic and functional predictions in human microbiome research
- (2015) Marcus B. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sample storage conditions significantly influence faecal microbiome profiles
- (2015) Jocelyn M Choo et al. Scientific Reports
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces
- (2008) H. Sakon et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search