Biliary Microbiota in Choledocholithiasis and Correlation With Duodenal Microbiota

Mapping the Segmental Microbiomes in the Human Small Bowel in Comparison with Stool: A REIMAGINE Study

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Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

(2020) Jasmine Chong et al.   Nature Protocols

Intestinal flora imbalance affects bile acid metabolism and is associated with gallstone formation

(2020) Qiang Wang et al.   BMC GASTROENTEROLOGY

Gallstone Disease and Microbiome

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Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory

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Molecular mechanism underlying miR‑130b‑Sp1 transcriptional regulation in LPS‑induced upregulation of MUC5AC in the bile duct epithelium

(2020) Xiaodong Wu et al.   Molecular Medicine Reports

Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals

(2019) Riccardo Vasapolli et al.   GASTROENTEROLOGY

Review of the Tokyo Guidelines 2018: Antimicrobial Therapy for Acute Cholangitis and Cholecystitis

(2019) Sara A. Buckman et al.   JAMA Surgery

The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile

(2019) Natalia Molinero et al.   Microbiome

KEGG Mapper for inferring cellular functions from protein sequences

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A Preliminary Study of Biliary Microbiota in Patients with Bile Duct Stones or Distal Cholangiocarcinoma

(2019) Bingrong Chen et al.   Biomed Research International

ERCP-related adverse events: European Society of Gastrointestinal Endoscopy (ESGE) Guideline

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Tokyo Guidelines 2018: diagnostic criteria and severity grading of acute cholangitis (with videos)

(2018) Seiki Kiriyama et al.   Journal of Hepato-Biliary-Pancreatic Sciences

Tokyo Guidelines 2018: initial management of acute biliary infection and flowchart for acute cholangitis

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Tokyo Guidelines 2018: antimicrobial therapy for acute cholangitis and cholecystitis

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Inflammation and the Gut-Liver Axis in the Pathophysiology of Cholangiopathies

(2018) Debora Giordano et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Role of the biliary microbiome in gallstone disease

(2018) Yining Wang et al.   Expert Review of Gastroenterology & Hepatology

Lipopolysaccharide stimulates endogenous β-glucuronidase via PKC/NF-κB/c-myc signaling cascade: a possible factor in hepatolithiasis formation

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MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

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Papillary cannulation and sphincterotomy techniques at ERCP: European Society of Gastrointestinal Endoscopy (ESGE) Clinical Guideline

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Roles of Sphincter of Oddi Laxity in Bile Duct Microenvironment in Patients with Cholangiolithiasis: From the Perspective of the Microbiome and Metabolome

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Influence of the Biliary System on Biliary Bacteria Revealed by Bacterial Communities of the Human Biliary and Upper Digestive Tracts

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Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Rate of duodenal-biliary reflux increases in patients with recurrent common bile duct stones: evidence from barium meal examination

(2015) Rongchun Zhang et al.   GASTROINTESTINAL ENDOSCOPY

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria

(2015) Hongzhang Shen et al.   Scientific Reports

Bile-induced peptidoglycan remodelling inSalmonella enterica

(2014) Sara B. Hernández et al.   ENVIRONMENTAL MICROBIOLOGY

Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study

(2013) Tao Wu et al.   BMC GENOMICS

LPS stimulates MUC5AC expression in human biliary epithelial cells: whether there exists a possible pathway of PKC/NADPH/ROS?

(2013) Min Li et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

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Sphincter of Oddi-preserving and T-Tube-free Laparoscopic Management of Extrahepatic Bile Duct Calculi

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New pathophysiological concepts underlying pathogenesis of pigment gallstones

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QIIME allows analysis of high-throughput community sequencing data

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