Host microbiota can facilitate pathogen infection

Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents

(2020) Jens Walter et al.   CELL

Designing Probiotic Therapies With Broad-Spectrum Activity Against a Wildlife Pathogen

(2020) Xavier A. Harrison et al.   Frontiers in Microbiology

Microbiota Metabolites in Health and Disease

(2020) Justin L. McCarville et al.   Annual Review of Immunology

The Landscape of Adaptive Evolution of a Gut Commensal Bacteria in Aging Mice

(2020) Hugo C. Barreto et al.   CURRENT BIOLOGY

Environmental Factors and Host Microbiomes Shape Host–Pathogen Dynamics

(2020) Adriana P. Bernardo-Cravo et al.   TRENDS IN PARASITOLOGY

Oral biofilms exposure to chlorhexidine results in altered microbial composition and metabolic profile

(2020) Ioanna Chatzigiannidou et al.   npj Biofilms and Microbiomes

The Intermucosal Connection between the Mouth and Gut in Commensal Pathobiont-Driven Colitis

(2020) Sho Kitamoto et al.   CELL

CeMbio - The Caenorhabditis elegans Microbiome Resource

(2020) Philipp Dirksen et al.   G3-Genes Genomes Genetics

Co‐ and polymicrobial infections in the gut mucosa: The host–microbiota–pathogen perspective

(2020) Teresa Frisan   CELLULAR MICROBIOLOGY

Probiotics as an alternative antimicrobial therapy: Current reality and future directions

(2020) Diego Romário Silva et al.   Journal of Functional Foods

Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

(2019) Alessio Tovaglieri et al.   Microbiome

The relationship between parasite virulence and environmental persistence: a meta-analysis

(2019) Charlotte Rafaluk-Mohr   PARASITOLOGY

Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

(2019) Serena Sanna et al.   NATURE GENETICS

A human gut bacterial genome and culture collection for improved metagenomic analyses

(2019) Samuel C. Forster et al.   NATURE BIOTECHNOLOGY

The Double Life of Group B Streptococcus: Asymptomatic Colonizer and Potent Pathogen

(2019) Blair Armistead et al.   JOURNAL OF MOLECULAR BIOLOGY

Diversity-disease relationships and shared species analyses for human microbiome-associated diseases

(2019) Zhanshan Ma et al.   ISME Journal

Natural C. elegans Microbiota Protects against Infection via Production of a Cyclic Lipopeptide of the Viscosin Group

(2019) Kohar A.B. Kissoyan et al.   CURRENT BIOLOGY

Defensive symbionts

(2019) Kayla C. King   CURRENT BIOLOGY

Evolutionary costs and benefits of infection with diverse strains of Spiroplasma in pea aphids

(2019) Hugo Mathé‐Hubert et al.   EVOLUTION

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut Microbiome

(2019) Courtney R. Armour et al.   mSystems

Reappraisal of probiotics’ safety in human

(2019) Farzaneh Sotoudegan et al.   FOOD AND CHEMICAL TOXICOLOGY

Probiotics and prebiotics in intestinal health and disease: from biology to the clinic

(2019) Mary Ellen Sanders et al.   Nature Reviews Gastroenterology & Hepatology

Laboratory mice born to wild mice have natural microbiota and model human immune responses

(2019) Stephan P. Rosshart et al.   SCIENCE

High proportions of bacteria and archaea across most biomes remain uncultured

(2019) Andrew D. Steen et al.   ISME Journal

Enteric viruses exploit the microbiota to promote infection

(2019) Christopher M Robinson   Current Opinion in Virology

How causal are microbiomes? A comparison with the Helicobacter pylori explanation of ulcers

(2019) Kate E. Lynch et al.   BIOLOGY & PHILOSOPHY

Probiotics for humans: hoax, hype, hope, or help

(2019) Julian Crane et al.   JOURNAL OF THE ROYAL SOCIETY OF NEW ZEALAND

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

(2019) Hongzhong Lu et al.   Nature Communications

Intestinal Microbiota Confer Protection by Priming the Immune System of Red Palm Weevil Rhynchophorus ferrugineus Olivier (Coleoptera: Dryophthoridae)

(2019) Abrar Muhammad et al.   Frontiers in Physiology

Advancing functional and translational microbiome research using meta-omics approaches

(2019) Xu Zhang et al.   Microbiome

The role of gut microbiota in Clostridium difficile infection

(2018) Michael Samarkos et al.   European Journal of Internal Medicine

Starvation stress affects the interplay among shrimp gut microbiota, digestion and immune activities

(2018) Wen-Fang Dai et al.   FISH & SHELLFISH IMMUNOLOGY

The effect of fecal microbiota transplantation on psychiatric symptoms among patients with irritable bowel syndrome, functional diarrhea and functional constipation: An open-label observational study

(2018) Shunya Kurokawa et al.   JOURNAL OF AFFECTIVE DISORDERS

Colonic aberrant crypt formation accompanies an increase of opportunistic pathogenic bacteria in C57BL/6 mice fed a high-fat diet

(2018) Huawei Zeng et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

A novel approach to wildlife transcriptomics provides evidence of disease-mediated differential expression and changes to the microbiome of amphibian populations

(2018) Lewis J. Campbell et al.   MOLECULAR ECOLOGY

Probiotic consortia are not uniformly effective against different amphibian chytrid pathogen isolates

(2018) Rachael E. Antwis et al.   MOLECULAR ECOLOGY

Interbacterial mechanisms of colonization resistance and the strategies pathogens use to overcome them

(2018) Matthew T. Sorbara et al.   Mucosal Immunology

The fecal metabolome as a functional readout of the gut microbiome

(2018) Jonas Zierer et al.   NATURE GENETICS

Streptococcus suis – The “Two Faces” of a Pathobiont in the Porcine Respiratory Tract

(2018) Désirée Vötsch et al.   Frontiers in Microbiology

Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model

(2018) Andrew J. Hryckowian et al.   Nature Microbiology

Microbiome: Focus on Causation and Mechanism

(2018) Michael A. Fischbach   CELL

Standardization in host–microbiota interaction studies: challenges, gnotobiology as a tool, and perspective

(2018) Catherine Mooser et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial antagonism in host-associated microbial communities

(2018) Leonor García-Bayona et al.   SCIENCE

An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment

(2018) Magdalena San Roman et al.   PLoS Computational Biology

Gut microbiota and obesity: An opportunity to alter obesity through faecal microbiota transplant (FMT)

(2018) Patrick Lee et al.   DIABETES OBESITY & METABOLISM

Facilitation promotes invasions in plant‐associated microbial communities

(2018) Mei Li et al.   ECOLOGY LETTERS

Experimental evolution of a fungal pathogen into a gut symbiont

(2018) Gloria Hoi Wan Tso et al.   SCIENCE

Probiotics as Means of Diseases Control in Aquaculture, a Review of Current Knowledge and Future Perspectives

(2018) Seyed Hossein Hoseinifar et al.   Frontiers in Microbiology

Skin Colonization by Staphylococcus aureus Precedes the Clinical Diagnosis of Atopic Dermatitis in Infancy

(2017) Patrick Meylan et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Moving beyond microbiome-wide associations to causal microbe identification

(2017) Neeraj K. Surana et al.   NATURE

Insect pathogenic fungus interacts with the gut microbiota to accelerate mosquito mortality

(2017) Ge Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Commensal-to-pathogen transition: One-single transposon insertion results in two pathoadaptive traits in Escherichia coli -macrophage interaction

(2017) João T. Proença et al.   Scientific Reports

Bacterial toxins: Offensive, defensive, or something else altogether?

(2017) Justine K. Rudkin et al.   PLoS Pathogens

Antibiotic-Induced Pathobiont Dissemination Accelerates Mortality in Severe Experimental Pancreatitis

(2017) Fernanda S. Soares et al.   Frontiers in Immunology

Protective Microbiota: From Localized to Long-Reaching Co-Immunity

(2017) Lynn Chiu et al.   Frontiers in Immunology

Immune system stimulation by the native gut microbiota of honey bees

(2017) Waldan K. Kwong et al.   Royal Society Open Science

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Effect of Fecal Microbiota Transplantation on Recurrence in Multiply Recurrent Clostridium difficile Infection

(2016) Colleen R. Kelly et al.   ANNALS OF INTERNAL MEDICINE

Bacterial vaginosis: a critical analysis of current knowledge

(2016) D Nasioudis et al.   BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY

Host-pathogen interactions of nontypeableHaemophilus influenzae: from commensal to pathogen

(2016) Benjamin Luke Duell et al.   FEBS LETTERS

Rapid evolution of microbe-mediated protection against pathogens in a worm host

(2016) Kayla C King et al.   ISME Journal

A clinical update on the significance of the gut microbiota in systemic autoimmunity

(2016) Elizabeth C. Rosser et al.   JOURNAL OF AUTOIMMUNITY

Co-evolutionary dynamics between a defensive microbe and a pathogen driven by fluctuating selection

(2016) Suzanne A. Ford et al.   MOLECULAR ECOLOGY

Interactions between the microbiota and pathogenic bacteria in the gut

(2016) Andreas J. Bäumler et al.   NATURE

Midgut microbiota and host immunocompetence underlieBacillus thuringiensiskilling mechanism

(2016) Silvia Caccia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early gut colonizers shape parasite susceptibility and microbiota composition in honey bee workers

(2016) Ryan S. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Addicted? Reduced host resistance in populations with defensive symbionts

(2016) Julien Martinez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dancing with the Stars: How Choreographed Bacterial Interactions Dictate Nososymbiocity and Give Rise to Keystone Pathogens, Accessory Pathogens, and Pathobionts

(2016) George Hajishengallis et al.   TRENDS IN MICROBIOLOGY

Antibiotic-Induced Changes in the Intestinal Microbiota and Disease

(2016) Simone Becattini et al.   TRENDS IN MOLECULAR MEDICINE

A Commensal Bacterium Promotes Virulence of an Opportunistic Pathogen via Cross-Respiration

(2016) Apollo Stacy et al.   mBio

Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

(2016) Niklas Grassl et al.   Genome Medicine

Harnessing the Power of Defensive Microbes: Evolutionary Implications in Nature and Disease Control

(2016) Suzanne A. Ford et al.   PLoS Pathogens

Systematic review with meta-analysis: long-term outcomes of faecal microbiota transplantation forClostridium difficileinfection

(2015) Y.-T. Li et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Symbiont transmission entails the risk of parasite infection

(2015) Hassan Salem et al.   Biology Letters

Frenemies: Signaling and Nutritional Integration in Pathogen-Microbiota-Host Interactions

(2015) Elizabeth A. Cameron et al.   Cell Host & Microbe

Transient dynamics of competitive exclusion in microbial communities

(2015) Stilianos Louca et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogens, Commensal Symbionts, and Pathobionts: Discovery and Functional Effects on the Host

(2015) Mathias Hornef   ILAR JOURNAL

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time

(2015) Britt Koskella et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus

(2015) M. H. Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria

(2015) João Barroso-Batista et al.   Nature Communications

Should Symbionts Be Nice or Selfish? Antiviral Effects of Wolbachia Are Costly but Reproductive Parasitism Is Not

(2015) Julien Martinez et al.   PLoS Pathogens

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?

(2015) Tiffanie M. Nelson et al.   Frontiers in Physiology

Bacterial diversity and Clostridia abundance decrease with increasing severity of necrotizing enterocolitis

(2015) Valarie E McMurtry et al.   Microbiome

Assessing the global phylum level diversity within the bacterial domain: A review

(2015) Noha H. Youssef et al.   Journal of Advanced Research

Peritonitis caused by Bifidobacterium longum: Case report and literature review

(2014) Daniel Tena et al.   ANAEROBE

The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape

(2014) Meredith M. Curtis et al.   Cell Host & Microbe

EXPERIMENTAL EVOLUTION OF PARASITOID INFECTIVITY ON SYMBIONT-PROTECTED HOSTS LEADS TO THE EMERGENCE OF GENOTYPE SPECIFICITY

(2014) Romain Rouchet et al.   EVOLUTION

Inflammation-associated Adherent-invasive Escherichia coli Are Enriched in Pathways for Use of Propanediol and Iron and M-cell Translocation

(2014) Belgin Dogan et al.   INFLAMMATORY BOWEL DISEASES

Antibiotics and the gut microbiota

(2014) Sheetal R. Modi et al.   JOURNAL OF CLINICAL INVESTIGATION

Early Empiric Antibiotic Use in Preterm Infants Is Associated with Lower Bacterial Diversity and Higher Relative Abundance of Enterobacter

(2014) Corryn Greenwood et al.   JOURNAL OF PEDIATRICS

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic

(2014) Colin Hill et al.   Nature Reviews Gastroenterology & Hepatology

Stability of Microbiota Facilitated by Host Immune Regulation: Informing Probiotic Strategies to Manage Amphibian Disease

(2014) Denise Küng et al.   PLoS One

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

(2014) Casey M. Theriot et al.   Nature Communications

Bacterial-Derived Uracil as a Modulator of Mucosal Immunity and Gut-Microbe Homeostasis in Drosophila

(2013) Kyung-Ah Lee et al.   CELL

Two Leucobacter Strains Exert Complementary Virulence on Caenorhabditis Including Death by Worm-Star Formation

(2013) Jonathan Hodgkin et al.   CURRENT BIOLOGY

Fecal microbiota transplantation for Clostridium difficile infection

(2013) Andrea Lo Vecchio et al.   CURRENT OPINION IN GASTROENTEROLOGY

The intestinal microbiota and susceptibility to infection in immunocompromised patients

(2013) Ying Taur et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Probiotics, gut microbiota and health

(2013) M.-J. Butel   MEDECINE ET MALADIES INFECTIEUSES

The role of the immune system in governing host-microbe interactions in the intestine

(2013) Eric M Brown et al.   NATURE IMMUNOLOGY

A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease

(2013) Carl J. Yeoman et al.   PLoS One

Correction: The AgI/II Family Adhesin AspA Is Required for Respiratory Infection by Streptococcus pyogenes

(2013) Linda Franklin et al.   PLoS One

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche Construction Theory: A Practical Guide for Ecologists

(2013) John Odling-Smee et al.   QUARTERLY REVIEW OF BIOLOGY

Interkingdom Signaling Induces Streptococcus pneumoniae Biofilm Dispersion and Transition from Asymptomatic Colonization to Disease

(2013) L. R. Marks et al.   mBio

Wolbachia Variants Induce Differential Protection to Viruses in Drosophila melanogaster: A Phenotypic and Phylogenomic Analysis

(2013) Ewa Chrostek et al.   PLoS Genetics

Wolbachia-Associated Bacterial Protection in the Mosquito Aedes aegypti

(2013) Yixin H. Ye et al.   PLoS Neglected Tropical Diseases

Antiviral Protection and the Importance of Wolbachia Density and Tissue Tropism in Drosophila simulans

(2012) Sheree E. Osborne et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Endophytic fungi associated with Fallopia japonica (Polygonaceae) in Japan and their interactions with Puccinia polygoni-amphibii var. tovariae, a candidate for classical biological control

(2012) Daisuke Kurose et al.   Fungal Biology

Alterations in the Porcine Colon Microbiota Induced by the Gastrointestinal Nematode Trichuris suis

(2012) Robert W. Li et al.   INFECTION AND IMMUNITY

Lethal inflammasome activation by a multidrug-resistant pathobiont upon antibiotic disruption of the microbiota

(2012) Janelle S Ayres et al.   NATURE MEDICINE

The gut microbiota—a clinical perspective on lessons learned

(2012) Fergus Shanahan   Nature Reviews Gastroenterology & Hepatology

Regulated Virulence Controls the Ability of a Pathogen to Compete with the Gut Microbiota

(2012) N. Kamada et al.   SCIENCE

Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control

(2012) Sam P. Brown et al.   TRENDS IN MICROBIOLOGY

Regulation of phenotypic transitions in the fungal pathogenCandida albicans

(2012) Guanghua Huang   Virulence

Mechanisms of Pathogenesis, Infective Dose and Virulence in Human Parasites

(2012) Helen C. Leggett et al.   PLoS Pathogens

The function of our microbiota: who is out there and what do they do?

(2012) Noora Ottman et al.   Frontiers in Cellular and Infection Microbiology

Low-Abundance Biofilm Species Orchestrates Inflammatory Periodontal Disease through the Commensal Microbiota and Complement

(2011) George Hajishengallis et al.   Cell Host & Microbe

Enteric pathogen exploitation of the microbiota-generated nutrient environment of the gut

(2011) Kristie M Keeney et al.   CURRENT OPINION IN MICROBIOLOGY

Preserving the Lifesaving Power of Antimicrobial Agents

(2011) James M. Hughes   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Only helpful when required: a longevity cost of harbouring defensive symbionts

(2011) C. VORBURGER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Bifidobacteria can protect from enteropathogenic infection through production of acetate

(2011) Shinji Fukuda et al.   NATURE

The microbiome-gut-brain axis: from bowel to behavior

(2011) J. F. Cryan et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intestinal Microbiota Promote Enteric Virus Replication and Systemic Pathogenesis

(2011) S. K. Kuss et al.   SCIENCE

From Commensal to Pathogen: Translocation of Enterococcus faecalis from the Midgut to the Hemocoel of Manduca sexta

(2011) K. L. Mason et al.   mBio

Metabolite Cross-Feeding Enhances Virulence in a Model Polymicrobial Infection

(2011) Matthew M. Ramsey et al.   PLoS Pathogens

Gut Microbes: From Bugs to Drugs

(2010) Fergus Shanahan   AMERICAN JOURNAL OF GASTROENTEROLOGY

A Pathobiont of the Microbiota Balances Host Colonization and Intestinal Inflammation

(2010) Janet Chow et al.   Cell Host & Microbe

Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity

(2010) Thomas B Clarke et al.   NATURE MEDICINE

Exploitation of the Intestinal Microflora by the Parasitic Nematode Trichuris muris

(2010) K. S. Hayes et al.   SCIENCE

Current Concepts of the Intestinal Microbiota and the Pathogenesis of Infection

(2010) Leslie H. Wardwell et al.   Current Infectious Disease Reports

Contributions of gut bacteria to Bacillus thuringiensis-induced mortality vary across a range of Lepidoptera

(2009) Nichole A Broderick et al.   BMC BIOLOGY

SYNTHESIS: Evolutionary ecology of microbial wars: within-host competition and (incidental) virulence

(2009) Sam P. Brown et al.   Evolutionary Applications

Immune Activation by Life-Shortening Wolbachia and Reduced Filarial Competence in Mosquitoes

(2009) Z. Kambris et al.   SCIENCE

QUANTIFYING THE COMPLEXITIES OFSACCHAROMYCES CEREVISIAE'S ECOSYSTEM ENGINEERING VIA FERMENTATION

(2008) Matthew R. Goddard   ECOLOGY

A microbial symbiosis factor prevents intestinal inflammatory disease

(2008) Sarkis K. Mazmanian et al.   NATURE

Safety of probiotics: translocation and infection

(2008) Min-Tze Liong   NUTRITION REVIEWS

Nucleotide Biosynthesis Is Critical for Growth of Bacteria in Human Blood

(2008) Shalaka Samant et al.   PLoS Pathogens

Innate Immune Homeostasis by the Homeobox Gene Caudal and Commensal-Gut Mutualism in Drosophila

(2008) J.-H. Ryu et al.   SCIENCE