Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

Plasma Proteome Profiling to Assess Human Health and Disease

(2016) Philipp E. Geyer et al.   Cell Systems

The human oral metaproteome reveals potential biomarkers for caries disease

(2015) Pedro Belda-Ferre et al.   PROTEOMICS

High Fidelity Between Saliva Proteomics and the Biologic State of Salivary Glands Defines Biomarker Signatures for Primary Sjögren's Syndrome

(2015) Nicolas Delaleu et al.   Arthritis & Rheumatology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer

(2014) Christian D. Kelstrup et al.   JOURNAL OF PROTEOME RESEARCH

The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer

(2014) Richard Alexander Scheltema et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Dynamics and associations of microbial community types across the human body

(2014) Tao Ding et al.   NATURE

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

Saliva: A Fluid of Study for OMICS

(2014) Betzaida Cuevas-Córdoba et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Vitamin B12 deficiency

(2014) A. Hunt et al.   BMJ-British Medical Journal

Salivary Biomarkers: Toward Future Clinical and Diagnostic Utilities

(2013) J. M. Yoshizawa et al.   CLINICAL MICROBIOLOGY REVIEWS

Vitamin B12 Deficiency

(2013) Sally P. Stabler   NEW ENGLAND JOURNAL OF MEDICINE

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

(2012) Juergen Cox et al.   BMC BIOINFORMATICS

Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database

(2012) Christoph Schaab et al.   MOLECULAR & CELLULAR PROTEOMICS

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The oral metagenome in health and disease

(2011) Pedro Belda-Ferre et al.   ISME Journal

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap

(2011) Nagarjuna Nagaraj et al.   MOLECULAR & CELLULAR PROTEOMICS

Microbiome: Gut reaction

(2011) Cassandra Willyard   NATURE

Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination

(2011) Kerstin Berer et al.   NATURE

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

(2011) Yuexi Wang et al.   PROTEOMICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Bacterial diversity in the oral cavity of 10 healthy individuals

(2010) Elisabeth M Bik et al.   ISME Journal

The Role of Bacteria in the Caries Process

(2010) N. Takahashi et al.   JOURNAL OF DENTAL RESEARCH

Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome

(2010) Nagarjuna Nagaraj et al.   JOURNAL OF PROTEOME RESEARCH

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Salivary analysis of oral cancer biomarkers

(2009) T Shpitzer et al.   BRITISH JOURNAL OF CANCER

A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva

(2009) Sricharan Bandhakavi et al.   JOURNAL OF PROTEOME RESEARCH

Bacteria of Dental Caries in Primary and Permanent Teeth in Children and Young Adults

(2008) J. A. Aas et al.   JOURNAL OF CLINICAL MICROBIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY