Genomes of the willow-galling sawflies Euura lappo and Eupontania aestiva (Hymenoptera: Tenthredinidae): a resource for research on ecological speciation, adaptation, and gall induction

A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera)

(2020) Hanno Schmidt et al.   G3-Genes Genomes Genetics

Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

(2020) Jan Philip Oeyen et al.   Genome Biology and Evolution

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

(2019) Malte Petersen et al.   BMC EVOLUTIONARY BIOLOGY

Research trends in ecosystem services provided by insects

(2018) Jorge Ari Noriega et al.   BASIC AND APPLIED ECOLOGY

Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order

(2018) Andrew A. Forbes et al.   BMC ECOLOGY

Genomes of the Hymenoptera

(2018) Michael G Branstetter et al.   Current Opinion in Insect Science

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

(2018) Dominique Gravel et al.   ECOGRAPHY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

North European gall-inducing Euura sawflies (Hymenoptera, Tenthredinidae, Nematinae)

(2017) ANDREW D. LISTON et al.   ZOOTAXA

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment

(2015) Patrik Koskinen et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

A Comparative Analysis of Genetic Differentiation across Six Shared Willow Host Species in Leaf- and Bud-Galling Sawflies

(2015) Sanna A. Leppänen et al.   PLoS One

Phylogeny of the symphytan grade of Hymenoptera: new pieces into the old jigsaw(fly) puzzle

(2014) Tobias Malm et al.   CLADISTICS

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes

(2014) W. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The MaSuRCA genome assembler

(2013) Aleksey V. Zimin et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

Order Hymenoptera. In: Zhang, Z.-Q. (Ed.) Animal Biodiversity: An Outline of Higher-level Classification and Survey of Taxonomic Richness (Addenda 2013)

(2013) ALEXANDRE P. AGUIAR et al.   ZOOTAXA

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

(2012) Elizabeth P. Murchison et al.   CELL

Phytohormones and willow gall induction by a gall-inducing sawfly

(2012) Hiroki Yamaguchi et al.   NEW PHYTOLOGIST

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

GeneWaltz–A new method for reducing the false positives of gene finding

(2010) Kazuharu Misawa et al.   BioData Mining

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS