MultiPhATE2: code for functional annotation and comparison of phage genomes

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes

(2021) Katelyn McNair et al.   Microorganisms

Current challenges and future opportunities of phage therapy

(2020) Diana P Pires et al.   FEMS MICROBIOLOGY REVIEWS

Standardized bacteriophage purification for personalized phage therapy

(2020) Tiffany Luong et al.   Nature Protocols

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

(2020) Kristopher Kieft et al.   Microbiome

A Review of Topical Phage Therapy for Chronically Infected Wounds and Preparations for a Randomized Adaptive Clinical Trial Evaluating Topical Phage Therapy in Chronically Infected Diabetic Foot Ulcers

(2020) Christopher Anthony Duplessis et al.   Antibiotics-Basel

Phage Therapy in the Postantibiotic Era

(2019) Fernando L. Gordillo Altamirano et al.   CLINICAL MICROBIOLOGY REVIEWS

PHANOTATE: a novel approach to gene identification in phage genomes

(2019) Katelyn McNair et al.   BIOINFORMATICS

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates

(2019) Carol L Ecale Zhou et al.   BIOINFORMATICS

Phage therapy: Current status and perspectives

(2019) Andrzej Górski et al.   MEDICINAL RESEARCH REVIEWS

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

(2019) João L. Reis-Cunha et al.   PLoS One

The Global Virome Project

(2018) Dennis Carroll et al.   SCIENCE

Characterizing Phage Genomes for Therapeutic Applications

(2018) Casandra Philipson et al.   Viruses-Basel

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149

(2018) Rok Tkavc et al.   Frontiers in Microbiology

Bacteriophage Therapy: Clinical Trials and Regulatory Hurdles

(2018) Lucy L. Furfaro et al.   Frontiers in Cellular and Infection Microbiology

PhagesDB: the actinobacteriophage database

(2016) Daniel A Russell et al.   BIOINFORMATICS

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

(2016) Po-E Li et al.   NUCLEIC ACIDS RESEARCH

Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation

(2016) Ana Laura Grazziotin et al.   NUCLEIC ACIDS RESEARCH

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

(2016) Patrick W. Laffy et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Engineered bacteriophage lysins as novel anti-infectives

(2014) Hang Yang et al.   Frontiers in Microbiology

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS