Genomics and transcriptomics of the green mussel explain the durability of its byssus

Biochemical Characterization of Oyster and Clam Galectins: Selective Recognition of Carbohydrate Ligands on Host Hemocytes and Perkinsus Parasites

(2020) Gerardo R. Vasta et al.   Frontiers in Chemistry

The Whole-Genome Sequencing and Hybrid Assembly of Mytilus coruscus

(2020) Ronghua Li et al.   Frontiers in Genetics

Preliminary study and first evidence of presence of microplastics and colorants in green mussel, Perna viridis (Linnaeus, 1758), from southeast coast of India

(2019) Naidu S.A.   MARINE POLLUTION BULLETIN

High-throughput identification of heavy metal binding proteins from the byssus of chinese green mussel (Perna viridis) by combination of transcriptome and proteome sequencing

(2019) Xinhui Zhang et al.   PLoS One

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Comparative analysis of the ribosomal DNA repeat unit (rDNA) of Perna viridis (Linnaeus, 1758) and Perna canaliculus (Gmelin, 1791)

(2019) Zhansheng Guo et al.   PeerJ

A mitochondrial genome phylogeny of Mytilidae (Bivalvia: Mytilida)

(2019) Yucheol Lee et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Occurrence, stability, and associated species of subtidal mussel beds in the North Frisian Wadden Sea (German North Sea Coast)

(2019) Klaus Ricklefs et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Genetic diversity of a hitchhiker and prized food source in the Anthropocene: the Asian green mussel Perna viridis (Mollusca, Mytilidae)

(2018) P. Joana Dias et al.   BIOLOGICAL INVASIONS

The evolution of molluscs

(2018) Andreas Wanninger et al.   BIOLOGICAL REVIEWS

Feeding Behavior of the Native Mussel Ischadium recurvum and the Invasive Mussels Mytella charruana and Perna viridis in FL, USA, Across a Salinity Gradient

(2018) E. Galimany et al.   Estuaries and Coasts

Assessing the relationship between the abundance and properties of microplastics in water and in mussels

(2018) Xiaoyun Qu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Mussel beds are biological power stations on intertidal flats

(2017) Friederike G. Engel et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Mussel adhesion – essential footwork

(2017) J. Herbert Waite   JOURNAL OF EXPERIMENTAL BIOLOGY

A cohort of new adhesive proteins identified from transcriptomic analysis of mussel foot glands

(2017) Daniel G. DeMartini et al.   Journal of the Royal Society Interface

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

(2017) Marcela Uliano-Silva et al.   GigaScience

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

In-depth proteomic analysis of the byssus from marine mussel Mytilus coruscus

(2016) Chuan-li Qin et al.   Journal of Proteomics

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Sugary interfaces mitigate contact damage where stiff meets soft

(2016) Hee Young Yoo et al.   Nature Communications

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review

(2014) A. Louise Allcock et al.   JOURNAL OF NATURAL HISTORY

The origins of molluscs

(2014) Jakob Vinther   PALAEONTOLOGY

Structural and functional features of a collagen-binding matrix protein from the mussel byssus

(2014) Michael H. Suhre et al.   Nature Communications

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science

(2013) Paul A Guerette et al.   NATURE BIOTECHNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Marine mussel adhesion: biochemistry, mechanisms, and biomimetics

(2012) Nandika Bandara et al.   JOURNAL OF ADHESION SCIENCE AND TECHNOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

Adhesion mechanism in a DOPA-deficient foot protein from green mussels

(2012) Dong Soo Hwang et al.   Soft Matter

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Prolyl 4-hydroxylase

(2010) Kelly L. Gorres et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Recruitment preferences of non-native mussels: interaction between marine invasions and land-use changes

(2010) M. R. Gilg et al.   JOURNAL OF MOLLUSCAN STUDIES

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Glycosylated Hydroxytryptophan in a Mussel Adhesive Protein fromPerna viridis

(2009) Hua Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Direct mapping and alignment of protein sequences onto genomic sequence

(2008) Osamu Gotoh   BIOINFORMATICS