Antiviral Resistance and Phage Counter Adaptation to Antibiotic-Resistant Extraintestinal Pathogenic Escherichia coli

Bacteriophage-resistant Acinetobacter baumannii are resensitized to antimicrobials

(2021) Fernando Gordillo Altamirano et al.   Nature Microbiology

The arms race between bacteria and their phage foes

(2020) Hannah G. Hampton et al.   NATURE

Development of a Bacteriophage Cocktail to Constrain the Emergence of Phage-Resistant Pseudomonas aeruginosa

(2020) Yuhui Yang et al.   Frontiers in Microbiology

High-throughput mapping of the phage resistance landscape in E. coli

(2020) Vivek K. Mutalik et al.   PLOS BIOLOGY

Lessons Learned From the First 10 Consecutive Cases of Intravenous Bacteriophage Therapy to Treat Multidrug-Resistant Bacterial Infections at a Single Center in the United States

(2020) Saima Aslam et al.   Open Forum Infectious Diseases

Directed in Vitro Evolution of Therapeutic Bacteriophages: The Appelmans Protocol

(2019) Ben Burrowes et al.   Viruses-Basel

Pleiotropic effects of rfa-gene mutations on Escherichia coli envelope properties

(2019) Christophe Pagnout et al.   Scientific Reports

The Rho-independent transcription terminator for the porA gene enhances expression of the major outer membrane protein and Campylobacter jejuni virulence in abortion induction

(2019) Lei Dai et al.   INFECTION AND IMMUNITY

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

(2019) James J Davis et al.   NUCLEIC ACIDS RESEARCH

Constructing and Characterizing Bacteriophage Libraries for Phage Therapy of Human Infections

(2019) Shelley B. Gibson et al.   Frontiers in Microbiology

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

Metals Enhance the Killing of Bacteria by Bacteriophage in Human Blood

(2018) Li Ma et al.   Scientific Reports

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles

(2017) Louise Roer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A cocktail of three virulent bacteriophages prevents Vibrio cholerae infection in animal models

(2017) Minmin Yen et al.   Nature Communications

Phage therapy for the treatment of human intestinal bacterial infections: soon to be a reality?

(2017) Harald Brüssow   Expert Review of Gastroenterology & Hepatology

Bacteriophages from ExPEC Reservoirs Kill Pandemic Multidrug-Resistant Strains of Clonal Group ST131 in Animal Models of Bacteremia

(2017) Sabrina I. Green et al.   Scientific Reports

Silk route to the acceptance and re-implementation of bacteriophage therapy

(2016)   Biotechnology Journal

Parasite diversity drives rapid host dynamics and evolution of resistance in a bacteria-phage system

(2016) Alex Betts et al.   EVOLUTION

The Effect of Lipopolysaccharide Core Oligosaccharide Size on the Electrostatic Binding of Antimicrobial Proteins to Models of the Gram Negative Bacterial Outer Membrane

(2016) Luke. A. Clifton et al.   LANGMUIR

Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis

(2016) Wanatchaporn Arunmanee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Silk route to the acceptance and re-implementation of bacteriophage therapy

(2016)   Biotechnology Journal

Bacteria vs. Bacteriophages: Parallel Evolution of Immune Arsenals

(2016) Muhammad A. B. Shabbir et al.   Frontiers in Microbiology

Bacteriophage treatment of intransigent diabetic toe ulcers: a case series

(2016) R. Fish et al.   Journal of Wound Care

Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa

(2016) Benjamin K. Chan et al.   Scientific Reports

Murine Model of Chemotherapy-Induced Extraintestinal Pathogenic Escherichia coli Translocation

(2015) Sabrina I. Green et al.   INFECTION AND IMMUNITY

Bacillus anthracis Overcomes an Amino Acid Auxotrophy by Cleaving Host Serum Proteins

(2015) Austen Terwilliger et al.   JOURNAL OF BACTERIOLOGY

Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution withPseudomonas aeruginosacystic fibrosis bacterial isolates

(2015) V-P. Friman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Virulence reduction in bacteriophage resistant bacteria

(2015) Marcela León et al.   Frontiers in Microbiology

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Correction for Betts et al., Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophages: Fig. 3.

(2014)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary consequences of intra-patient phage predation on microbial populations

(2014) Kimberley D Seed et al.   eLife

Phage–host interplay: examples from tailed phages and Gram-negative bacterial pathogens

(2014) Soraya Chaturongakul et al.   Frontiers in Microbiology

Bacteriophage therapy of venous leg ulcers in humans: results of a phase I safety trial

(2014) D.D. Rhoads et al.   Journal of Wound Care

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phage-Driven Loss of Virulence in a Fish Pathogenic Bacterium

(2013) Elina Laanto et al.   PLoS One

Experimental coevolution of species interactions

(2013) Michael A. Brockhurst et al.   TRENDS IN ECOLOGY & EVOLUTION

Viral host-adaptation: insights from evolution experiments with phages

(2013) James PJ Hall et al.   Current Opinion in Virology

Time-shift experiments and patterns of adaptation across time and space

(2012) François Blanquart et al.   ECOLOGY LETTERS

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Interaction of Bacteriophage l with Its E. coli Receptor, LamB

(2012) Sujoy Chatterjee et al.   Viruses-Basel

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions

(2011) Maxim V. Shapovalov et al.   STRUCTURE

Escherichia coliSequence Type ST131 as the Major Cause of Serious Multidrug‐ResistantE. coliInfections in the United States

(2010) James R. Johnson et al.   CLINICAL INFECTIOUS DISEASES

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Bacteriophage-Resistant Staphylococcus aureus Mutant Confers Broad Immunity against Staphylococcal Infection in Mice

(2010) Rosanna Capparelli et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Nasty Viruses, Costly Plasmids, Population Dynamics, and the Conditions for Establishing and Maintaining CRISPR-Mediated Adaptive Immunity in Bacteria

(2010) Bruce R. Levin   PLoS Genetics

A controlled clinical trial of a therapeutic bacteriophage preparation in chronic otitis due to antibiotic-resistantPseudomonas aeruginosa; a preliminary report of efficacy

(2009) A. Wright et al.   CLINICAL OTOLARYNGOLOGY

Time-shift experiments as a tool to study antagonistic coevolution

(2009) Sabrina Gaba et al.   TRENDS IN ECOLOGY & EVOLUTION

Outer membrane permeability and antibiotic resistance

(2008) Anne H. Delcour   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Host-parasite coevolution and patterns of adaptation across time and space

(2008) S. GANDON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY