The Implications of Interrelated Assumptions on Estimates of Divergence Times and Rates of Diversification

The temporal dynamics of evolutionary diversification in Ipomoea

(2020) Tom Carruthers et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extant timetrees are consistent with a myriad of diversification histories

(2020) Stilianos Louca et al.   NATURE

Island woodiness underpins accelerated disparification in plant radiations

(2019) Nicolai M. Nürk et al.   NEW PHYTOLOGIST

Rates of niche and phenotype evolution lag behind diversification in a temperate radiation

(2019) Ryan A. Folk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights from Empirical Analyses and Simulations on Using Multiple Fossil Calibrations with Relaxed Clocks to Estimate Divergence Times

(2019) Tom Carruthers et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Implications of Lineage-Specific Rates for Divergence Time Estimation

(2019) Tom Carruthers et al.   SYSTEMATIC BIOLOGY

Convergent evolution of high elevation plant growth forms and geographically structured variation in Andean Lupinus (Fabaceae)

(2018) Natalia Contreras-Ortiz et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia

(2018) Pablo Muñoz-Rodríguez et al.   CURRENT BIOLOGY

The timescale of early land plant evolution

(2018) Jennifer L. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The phylogeny and biogeography of Hakea (Proteaceae) reveals the role of biome shifts in a continental plant radiation

(2017) Marcel Cardillo et al.   EVOLUTION

Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution

(2017) Rachel C. M. Warnock et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models

(2017) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates

(2017) Joseph W Brown et al.   SYSTEMATIC BIOLOGY

Lost crops of the Incas: Origins of domestication of the Andean pulse crop tarwi, Lupinus mutabilis

(2016) G. W. Atchison et al.   AMERICAN JOURNAL OF BOTANY

The abiotic and biotic drivers of rapid diversification in Andean bellflowers (Campanulaceae)

(2016) Laura P. Lagomarsino et al.   NEW PHYTOLOGIST

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

(2016) Brian R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Widespread adaptive evolution during repeated evolutionary radiations in New World lupins

(2016) Bruno Nevado et al.   Nature Communications

Temperate radiations and dying embers of a tropical past: the diversification ofViburnum

(2015) Elizabeth L. Spriggs et al.   NEW PHYTOLOGIST

A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity

(2015) Susana Magallón et al.   NEW PHYTOLOGIST

The remarkable congruence of New and Old World savanna origins

(2014) R. Toby Pennington et al.   NEW PHYTOLOGIST

Savanna fire and the origins of the ‘underground forests’ of Africa

(2014) Olivier Maurin et al.   NEW PHYTOLOGIST

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Likelihood Inference of Non-Constant Diversification Rates with Incomplete Taxon Sampling

(2014) Sebastian Höhna   PLoS One

The fossilized birth-death process for coherent calibration of divergence-time estimates

(2014) T. A. Heath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors

(2014) R. C. M. Warnock et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci

(2014) Tianqi Zhu et al.   SYSTEMATIC BIOLOGY

Using More Than the Oldest Fossils: Dating Osmundaceae with Three Bayesian Clock Approaches

(2014) G. W. Grimm et al.   SYSTEMATIC BIOLOGY

The changing face of the molecular evolutionary clock

(2014) Simon Y.W. Ho   TRENDS IN ECOLOGY & EVOLUTION

Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

(2013) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

(2013) Tiina Särkinen et al.   BMC EVOLUTIONARY BIOLOGY

Macroevolutionary perspectives to environmental change

(2013) Fabien L. Condamine et al.   ECOLOGY LETTERS

Evidence for Adaptation to Fire Regimes in the Tropical Savannas of the Brazilian Cerrado

(2012) Marcelo F. Simon et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Method for Handling Missing Species in Diversification Analysis Applicable to Randomly or Nonrandomly Sampled Phylogenies

(2012) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

(2012) Christopher S. Drummond et al.   SYSTEMATIC BIOLOGY

Estimating Speciation and Extinction Rates for Phylogenies of Higher Taxa

(2012) Tanja Stadler et al.   SYSTEMATIC BIOLOGY

The unbearable uncertainty of Bayesian divergence time estimation

(2012) Mario DOS REIS et al.   Journal of Systematics and Evolution

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Exploring uncertainty in the calibration of the molecular clock

(2011) R. C. M. Warnock et al.   Biology Letters

Evolutionary islands in the Andes: persistence and isolation explain high endemism in Andean dry tropical forests

(2011) Tiina Särkinen et al.   JOURNAL OF BIOGEOGRAPHY

Inferring Speciation and Extinction Rates under Different Sampling Schemes

(2011) S. Hohna et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring speciation and extinction processes from extant species data

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

ESTIMATING DIVERSIFICATION RATES: HOW USEFUL ARE DIVERGENCE TIMES?

(2010) Joel O. Wertheim et al.   EVOLUTION

Slowdowns in Diversification Rates from Real Phylogenies May Not be Real

(2010) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

Woody Plant Diversity, Evolution, and Ecology in the Tropics: Perspectives from Seasonally Dry Tropical Forests

(2009) R. Toby Pennington et al.   Annual Review of Ecology Evolution and Systematics

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

On incomplete sampling under birth–death models and connections to the sampling-based coalescent

(2009) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Phylogenetic biome conservatism on a global scale

(2009) Michael D. Crisp et al.   NATURE

Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire

(2009) M. F. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The value of sampling anomalous taxa in phylogenetic studies: Major clades of the Asteraceae revealed

(2008) Jose L. Panero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A phylogenetic perspective on the distribution of plant diversity

(2008) M. J. Donoghue   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Density-dependent diversification in North American wood warblers

(2008) D. L Rabosky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae)

(2008) T. J Givnish et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES