Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species

Activity of selected enzymes as markers of ecotoxicity in technogenic salinization soils

(2019) Joanna Lemanowicz   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

American chestnut soil carbon and nitrogen dynamics: Implications for ecosystem response following restoration

(2019) Geoffrey W. Schwaner et al.   PEDOBIOLOGIA

Interactions among plants, bacteria, and fungi reduce extracellular enzyme activities under long-term N fertilization

(2018) Joseph E. Carrara et al.   GLOBAL CHANGE BIOLOGY

Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter

(2018) Matthew E. Craig et al.   GLOBAL CHANGE BIOLOGY

Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants

(2018) Mingyuan Wang et al.   BIORESOURCE TECHNOLOGY

Contrasting dynamics and trait controls in first-order root compared with leaf litter decomposition

(2018) Tao Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Tannins can slow-down but also speed-up soil enzymatic activity in boreal forest

(2017) Bartosz Adamczyk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic reconstruction of nitrogen cycling pathways in a CO 2 -enriched grassland ecosystem

(2017) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Divergence of species responses to climate change

(2017) Songlin Fei et al.   Science Advances

Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation

(2016) Michael E. Kurczy et al.   ACS Chemical Biology

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

Similar below-ground carbon cycling dynamics but contrasting modes of nitrogen cycling between arbuscular mycorrhizal and ectomycorrhizal forests

(2016) Guigang Lin et al.   NEW PHYTOLOGIST

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

(2016) Marcel Huntemann et al.   Standards in Genomic Sciences

Testing associations between tree species and nitrate availability: Do consistent patterns exist across spatial scales?

(2015) William T. Peterjohn et al.   FOREST ECOLOGY AND MANAGEMENT

Structures of regulatory machinery reveal novel molecular mechanisms controllingB. subtilisnitrogen homeostasis

(2015) Maria A. Schumacher et al.   GENES & DEVELOPMENT

Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes

(2015) Cheng-Heng Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Integrated metagenomics and network analysis of soil microbial community of the forest timberline

(2015) Junjun Ding et al.   Scientific Reports

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

(2014) Fabiana S. Paula et al.   MOLECULAR ECOLOGY

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

(2014) Colin Averill et al.   NATURE

Root-induced changes in nutrient cycling in forests depend on exudation rates

(2014) Huajun Yin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

(2014) Maria Mooshammer et al.   Nature Communications

Recently identified microbial guild mediates soil N2O sink capacity

(2014) Christopher M. Jones et al.   Nature Climate Change

Inter- and intra-specific competitiveness of plantation-grown American chestnut (Castanea dentata)

(2013) Martin-Michel Gauthier et al.   FOREST ECOLOGY AND MANAGEMENT

The mycorrhizal-associated nutrient economy: a new framework for predicting carbon-nutrient couplings in temperate forests

(2013) Richard P. Phillips et al.   NEW PHYTOLOGIST

The Populus Superoxide Dismutase Gene Family and Its Responses to Drought Stress in Transgenic Poplar Overexpressing a Pine Cytosolic Glutamine Synthetase (GS1a)

(2013) Juan Jesús Molina-Rueda et al.   PLoS One

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

(2012) Sarah D. Eisenlord et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anthropogenic N Deposition Increases Soil C Storage by Decreasing the Extent of Litter Decay: Analysis of Field Observations with an Ecosystem Model

(2012) Kyle A. Whittinghill et al.   ECOSYSTEMS

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Seasonal changes in nitrogen-cycle gene abundances and in bacterial communities in acidic forest soils

(2012) Jaejoon Jung et al.   JOURNAL OF MICROBIOLOGY

A conceptual framework for restoration of threatened plants: the effective model of American chestnut (Castanea dentata) reintroduction

(2012) Douglass F. Jacobs et al.   NEW PHYTOLOGIST

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

Soil properties associated with net nitrification following watershed conversion from Appalachian hardwoods to Norway spruce

(2011) Charlene N. Kelly et al.   PLANT AND SOIL

Seasonal Change in Vertical Distribution of Ammonia-Oxidizing Archaea and Bacteria and Their Nitrification in Temperate Forest Soil

(2010) Yuki Onodera et al.   MICROBES AND ENVIRONMENTS

Enhancing soil carbon storage for carbon remediation: potential contributions and constraints by microbes

(2010) Gary M. King   TRENDS IN MICROBIOLOGY

Soil priming by sugar and leaf-litter substrates: A link to microbial groups

(2009) Andrew T. Nottingham et al.   APPLIED SOIL ECOLOGY

Sequestering Atmospheric Carbon Dioxide

(2009) R. Lal   CRITICAL REVIEWS IN PLANT SCIENCES

Protein breakdown represents a major bottleneck in nitrogen cycling in grassland soils

(2009) M.T. Jan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of tree species on carbon stocks in forest floor and mineral soil and implications for soil carbon inventories

(2008) Catharina J.E. Schulp et al.   FOREST ECOLOGY AND MANAGEMENT

Bacillus subtilis GlnR contains an autoinhibitory C-terminal domain required for the interaction with glutamine synthetase

(2008) Lewis V. Wray et al.   MOLECULAR MICROBIOLOGY

Spatial scaling of functional gene diversity across various microbial taxa

(2008) J. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE