Genome-wide analysis of zinc finger motif-associated homeodomain (ZF-HD) family genes and their expression profiles under abiotic stresses and phytohormones stimuli in tea plants (Camellia sinensis)

Genome-wide investigation and transcriptional analysis of cytosine-5 DNA methyltransferase and DNA demethylase gene families in tea plant (Camellia sinensis) under abiotic stress and withering processing

(2020) Chen Zhu et al.   PeerJ

The reference genome of tea plant and resequencing of 81 diverse accessions provide insights into genome evolution and adaptation of tea plants

(2020) Enhua Xia et al.   Molecular Plant

The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons in Driving Genome Size Evolution

(2020) Qun-Jie Zhang et al.   Molecular Plant

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Population sequencing enhances understanding of tea plant evolution

(2020) Xinchao Wang et al.   Nature Communications

Identification and characterization of long non-coding RNAs regulating flavonoid biosynthesis in Ginkgo biloba leaves

(2020) Sian Liu et al.   INDUSTRIAL CROPS AND PRODUCTS

Arabidopsis zinc finger homeodomain protein ZHD5 promotes shoot regeneration and confers other cytokinin-related phenotypes when overexpressed

(2019) Jin-Baek Kim et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Tea Plant Information Archive ( TPIA ): A comprehensive genomics and bioinformatics platform for tea plant

(2019) En‐Hua Xia et al.   PLANT BIOTECHNOLOGY JOURNAL

Comparative Effect of Black, Green, Oolong and White Tea Intake on Body Weight Gain and Bile Acid Metabolism

(2019) Lili Sun et al.   NUTRITION

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

(2019) Yuqiong Guo et al.   BMC GENOMICS

Genome-wide investigation of the ZF-HD gene family in Tartary buckwheat (Fagopyrum tataricum)

(2019) Moyang Liu et al.   BMC PLANT BIOLOGY

Tissue specific long non-coding RNAs are involved in aroma formation of black tea

(2019) Deepti Varshney et al.   INDUSTRIAL CROPS AND PRODUCTS

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Identification of Regulatory Networks of MicroRNAs and Their Targets in Response to Colletotrichum gloeosporioides in Tea Plant (Camellia sinensis L.)

(2019) Anburaj Jeyaraj et al.   Frontiers in Plant Science

Plant Noncoding RNAs: Hidden Players in Development and Stress Responses

(2019) Yu Yu et al.   Annual Review of Cell and Developmental Biology

The features and regulation of co-transcriptional splicing in Arabidopsis

(2019) Danling Zhu et al.   Molecular Plant

Genome-wide investigation of superoxide dismutase (SOD) gene family and their regulatory miRNAs reveal the involvement in abiotic stress and hormone response in tea plant (Camellia sinensis)

(2019) Chengzhe Zhou et al.   PLoS One

Integration of metabolome and transcriptome reveals flavonoid accumulation in the intergeneric hybrid between Brassica rapa and Raphanus sativus

(2019) Libin Zhang et al.   Scientific Reports

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Systematic identification of long non-coding RNAs during pollen development and fertilization in Brassica rapa

(2018) Li Huang et al.   PLANT JOURNAL

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis)

(2018) Yong-Xin Wang et al.   Scientific Reports

Genome-wide identification, classification and expression pattern of LBD gene family in Camellia sinensis

(2018) Rui-Min Teng et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance

(2017) Lijun Zhang et al.   Molecular Plant

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

(2017) En-Hua Xia et al.   Molecular Plant

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Regulation of low temperature stress in plants by microRNAs

(2017) Swati Megha et al.   PLANT CELL AND ENVIRONMENT

Noncoding and coding transcriptome analysis reveals the regulation roles of long noncoding RNAs in fruit development of hot pepper (Capsicum annuum L.)

(2017) Lijun Ou et al.   PLANT GROWTH REGULATION

Erratum to: Genome-wide analysis and expression patterns of ZF-HD transcription factors under different developmental tissues and abiotic stresses in Chinese cabbage

(2016) Wenli Wang et al.   MOLECULAR GENETICS AND GENOMICS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Comparative transcriptome analysis of unripe and mid-ripe fruit of Mangifera indica (var. “Dashehari”) unravels ripening associated genes

(2016) Smriti Srivastava et al.   Scientific Reports

Global Transcriptional Analysis Reveals the Complex Relationship between Tea Quality, Leaf Senescence and the Responses to Cold-Drought Combined Stress in Camellia sinensis

(2016) Chao Zheng et al.   Frontiers in Plant Science

Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer

(2015) Yi Tong Zhang et al.   BMC GENOMICS

Homeodomain proteins: an update

(2015) Thomas R. Bürglin et al.   CHROMOSOMA

Endogenous target mimics, microRNA167, and its targets ARF6 and ARF8 during somatic embryo development in Dimocarpus longan Lour.

(2015) Yuling Lin et al.   MOLECULAR BREEDING

Endogenous target mimics down-regulate miR160 mediation of ARF10, -16, and -17 cleavage during somatic embryogenesis in Dimocarpus longan Lour

(2015) Yuling Lin et al.   Frontiers in Plant Science

Salicylic acid-induced abiotic stress tolerance and underlying mechanisms in plants

(2015) M. Iqbal R. Khan et al.   Frontiers in Plant Science

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

(2015) Jinyan Wang et al.   Scientific Reports

RNA regulatory networks in animals and plants: a long noncoding RNA perspective

(2014) Y. Bai et al.   Briefings in Functional Genomics

Genome-Wide Identification, Evolution and Expression Analysis of the Grape (Vitis vinifera L.) Zinc Finger-Homeodomain Gene Family

(2014) Hao Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The role of gibberellin signalling in plant responses to abiotic stress

(2013) E. H. Colebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The role of long non-coding RNA in transcriptional gene silencing

(2012) Andrzej T Wierzbicki   CURRENT OPINION IN PLANT BIOLOGY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Comparison of phytohormone signaling mechanisms

(2011) Xiaoyi Shan et al.   CURRENT OPINION IN PLANT BIOLOGY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

Transcription factors in plants and ABA dependent and independent abiotic stress signalling

(2010) P. K. Agarwal et al.   BIOLOGIA PLANTARUM

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree

(2010) Y.L. Lin et al.   PLANT SCIENCE

A Collection of Target Mimics for Comprehensive Analysis of MicroRNA Function in Arabidopsis thaliana

(2010) Marco Todesco et al.   PLoS Genetics

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

ThePopulusGenome Integrative Explorer (PopGenIE): a new resource for exploring thePopulusgenome

(2009) Andreas Sjödin et al.   NEW PHYTOLOGIST

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Functional Analysis of Transcription Factors in Arabidopsis

(2009) Nobutaka Mitsuda et al.   PLANT AND CELL PHYSIOLOGY

The role of microRNAs and other endogenous small RNAs in plant stress responses

(2008) L SHUKLA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

(2008) Mukesh Jain et al.   FEBS Journal

Phylogenetic Analysis of the Plant-specificZinc Finger-HomeoboxandMini Zinc FingerGene Families

(2008) Wei Hu et al.   Journal of Integrative Plant Biology