Evidence for continental-scale dispersal of antimicrobial resistant bacteria by landfill-foraging gulls

Gulls as Sources of Environmental Contamination by Colistin-resistant Bacteria

(2020) Alan B. Franklin et al.   Scientific Reports

Metadata Analysis of mcr-1-Bearing Plasmids Inspired by the Sequencing Evidence for Horizontal Transfer of Antibiotic Resistance Genes Between Polluted River and Wild Birds

(2020) Yufei Lin et al.   Frontiers in Microbiology

California Gull (Larus californicus) Space Use and Timing of Movements in Relation to Landfills and Breeding Colonies

(2019) Sarah H. Peterson et al.   WATERBIRDS

Satellite tracking of gulls and genomic characterization of faecal bacteria reveals environmentally mediated acquisition and dispersal of antimicrobial‐resistant Escherichia coli on the Kenai Peninsula, Alaska

(2019) Christina A. Ahlstrom et al.   MOLECULAR ECOLOGY

Repeated Detection of Carbapenemase-Producing Escherichia coli in Gulls Inhabiting Alaska

(2019) Christina A. Ahlstrom et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Identifying and Eliminating Sources of Recreational Water Quality Degradation along an Urban Coast

(2018) Meredith B. Nevers et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Potential for gulls to transport bacteria from human waste sites to beaches

(2018) Elizabeth W. Alm et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis

(2018) Christina A. Ahlstrom et al.   Scientific Reports

Long-term carriage and rapid transmission of extended spectrum beta-lactamase-producing E. coli within a flock of Mallards in the absence of antibiotic selection

(2018) Linus Sandegren et al.   Environmental Microbiology Reports

Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis

(2018) Alessandro Cassini et al.   LANCET INFECTIOUS DISEASES

The Prevalence of Integrons as the Carrier of Antibiotic Resistance Genes in Natural and Man-Made Environments

(2017) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

(2017) Ea Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Global epidemiology of CTX-M β-lactamases: temporal and geographical shifts in genotype

(2017) Edward R. Bevan et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

VIM-1 carbapenemase-producingEscherichia coliin gulls from southern France

(2017) Marion Vittecoq et al.   Ecology and Evolution

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Lateral Antimicrobial Resistance Genetic Transfer is active in the open environment

(2017) Luciana S. Chamosa et al.   Scientific Reports

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

(2016) Anna E. Sheppard et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Normalized resistance interpretation, the NRI method

(2016) Göran Kronvall et al.   APMIS

Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water

(2016) Ryota Gomi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diet Changes in Breeding Herring Gulls (Larus argentatus) in Witless Bay, Newfoundland and Labrador, Canada, over 40 Years

(2016) Alexander L. Bond   WATERBIRDS

The Rise and Fall of Ring-Billed Gulls (Larus delawarensis) in Eastern North America

(2016) Jean-François Giroux et al.   WATERBIRDS

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

High prevalence ofSalmonellaand IMP-4-producing Enterobacteriaceae in the silver gull on Five Islands, Australia

(2015) Monika Dolejska et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Tackling antibiotic resistance: the environmental framework

(2015) Thomas U. Berendonk et al.   NATURE REVIEWS MICROBIOLOGY

Antimicrobial resistance in humans, livestock and the wider environment

(2015) M. Woolhouse et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Terrestrial animal tracking as an eye on life and planet

(2015) R. Kays et al.   SCIENCE

Molecular evidence of the close relatedness of clinical, gull and wastewater isolates of quinolone-resistant Escherichia coli

(2015) Ana Rita Varela et al.   Journal of Global Antimicrobial Resistance

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

(2014) Michael R Gillings et al.   ISME Journal

What is a resistance gene? Ranking risk in resistomes

(2014) José L. Martínez et al.   NATURE REVIEWS MICROBIOLOGY

Selection of a Multidrug Resistance Plasmid by Sublethal Levels of Antibiotics and Heavy Metals

(2014) E. Gullberg et al.   mBio

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Comparable High Rates of Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli in Birds of Prey from Germany and Mongolia

(2013) Sebastian Guenther et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Variation in spring migration routes and breeding distribution of northern pintails Anas acuta that winter in Japan

(2011) Jerry W. Hupp et al.   JOURNAL OF AVIAN BIOLOGY

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Does Garbage in the Diet Improve Reproductive Output of Glaucous Gulls?

(2010) Emily L. Weiser et al.   CONDOR

Editorial: Assessing the antimicrobial susceptibility of bacteria obtained from animals

(2010) S. Schwarz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

Globally disseminated human pathogenicEscherichia coliof O25b-ST131 clone, harbouringblaCTX-M-15, found in Glaucous-winged gull at remote Commander Islands, Russia

(2010) Jorge Hernandez et al.   Environmental Microbiology Reports

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Confidence intervals that match Fisher's exact or Blaker's exact tests

(2009) Michael P. Fay   BIOSTATISTICS

Ongoing Revolution in Bacteriology: Routine Identification of Bacteria by Matrix‐Assisted Laser Desorption Ionization Time‐of‐Flight Mass Spectrometry

(2009) Piseth Seng et al.   CLINICAL INFECTIOUS DISEASES

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assessing Genetic Heterogeneity within Bacterial Species Isolated from Gastrointestinal and Environmental Samples: How Many Isolates Does It Take?

(2008) D. Dopfer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH