Diversity and functional landscapes in the microbiota of animals in the wild
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Diversity and functional landscapes in the microbiota of animals in the wild
Authors
Keywords
-
Journal
SCIENCE
Volume 372, Issue 6539, Pages eabb5352
Publisher
American Association for the Advancement of Science (AAAS)
Online
2021-03-26
DOI
10.1126/science.abb5352
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Diversity and functional landscapes in the microbiota of animals in the wild
- (2021) Doron Levin et al. SCIENCE
- Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats
- (2020) Se Jin Song et al. mBio
- DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats
- (2020) Antton Alberdi et al. Nature Communications
- Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster)
- (2020) Yewen Sun et al. Frontiers in Microbiology
- Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency
- (2020) Jianping Quan et al. Frontiers in Microbiology
- Metagenomic analysis reveals the microbiome and resistome in migratory birds
- (2020) Jian Cao et al. Microbiome
- Integrated metagenomic and metatranscriptomic profiling reveals differentially expressed resistomes in human, chicken, and pig gut microbiomes
- (2020) Yanan Wang et al. ENVIRONMENT INTERNATIONAL
- The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography
- (2020) Tayte P. Campbell et al. ISME Journal
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
- (2020) Francesco Asnicar et al. Nature Communications
- A unified catalog of 204,938 reference genomes from the human gut microbiome
- (2020) Alexandre Almeida et al. NATURE BIOTECHNOLOGY
- Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
- (2019) Edoardo Pasolli et al. CELL
- Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices
- (2019) Brian K. Trevelline et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The antimicrobial potential of Streptomyces from insect microbiomes
- (2019) Marc G. Chevrette et al. Nature Communications
- A human gut bacterial genome and culture collection for improved metagenomic analyses
- (2019) Samuel C. Forster et al. NATURE BIOTECHNOLOGY
- Novel insights from uncultivated genomes of the global human gut microbiome
- (2019) Stephen Nayfach et al. NATURE
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Gut bacteria of animals/pests living in polluted environments are a potential source of antibacterials
- (2019) Noor Akbar et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
- (2019) Nicholas D. Youngblut et al. Nature Communications
- Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health
- (2019) Keylie M. Gibson et al. Scientific Reports
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Tail regeneration in Lepidosauria as an exception to the generalized lack of organ regeneration in amniotes
- (2019) Lorenzo Alibardi JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
- (2019) Robert D. Stewart et al. NATURE BIOTECHNOLOGY
- Faecal Virome Analysis of Wild Animals from Brazil
- (2019) Matheus A. Duarte et al. Viruses-Basel
- GenBank
- (2019) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)
- (2019) Wei Guo et al. Genes
- A genomic predictor of lifespan in vertebrates
- (2019) Benjamin Mayne et al. Scientific Reports
- Micro Integral Membrane Protein (MIMP), a Newly Discovered Anti-Inflammatory Protein of Lactobacillus Plantarum, Enhances the Gut Barrier and Modulates Microbiota and Inflammatory Cytokines
- (2018) Mingming Yin et al. CELLULAR PHYSIOLOGY AND BIOCHEMISTRY
- Discovery of Antimicrobial Lipodepsipeptides Produced by a Serratia sp. within Mosquito Microbiomes
- (2018) Jack G. Ganley et al. CHEMBIOCHEM
- Biosensors for pathogen surveillance
- (2018) Brindha J et al. Environmental Chemistry Letters
- Adaptive evolution to a high purine and fat diet of carnivorans revealed by gut microbiomes and host genomes
- (2018) Lifeng Zhu et al. ENVIRONMENTAL MICROBIOLOGY
- Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
- (2018) Katherine R. Amato et al. ISME Journal
- Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?
- (2018) Bruce E. Deagle et al. MOLECULAR ECOLOGY
- Rates of gut microbiome divergence in mammals
- (2018) Alex H. Nishida et al. MOLECULAR ECOLOGY
- How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
- (2018) Vanessa A. Mata et al. MOLECULAR ECOLOGY
- Different transfer pathways of an organochlorine pesticide across marine tropical food webs assessed with stable isotope analysis
- (2018) Charlotte R. Dromard et al. PLoS One
- Multiplexed gene synthesis in emulsions for exploring protein functional landscapes
- (2018) Calin Plesa et al. SCIENCE
- Disposable all-printed electronic biosensor for instantaneous detection and classification of pathogens
- (2018) Shawkat Ali et al. Scientific Reports
- FastSpar: rapid and scalable correlation estimation for compositional data
- (2018) Stephen C Watts et al. BIOINFORMATICS
- Evidence of selective pressure in whale fall microbiome proteins and its potential application to industry
- (2018) Robert Cardoso de Freitas et al. Marine Genomics
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Feeding responses of the golden jackal after reduction of anthropogenic food subsidies
- (2018) József Lanszki et al. PLoS One
- Fecal virome composition of migratory wild duck species
- (2018) Luis Alfonso Ramírez-Martínez et al. PLoS One
- Transmission modes of the mammalian gut microbiota
- (2018) Andrew H. Moeller et al. SCIENCE
- Conservation metagenomics: a new branch of conservation biology
- (2018) Fuwen Wei et al. Science China-Life Sciences
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Giant tortoise genomes provide insights into longevity and age-related disease
- (2018) Víctor Quesada et al. Nature Ecology & Evolution
- Life histories and conservation of long-lived reptiles, an illustration with the American crocodile (Crocodylus acutus )
- (2017) Venetia Briggs-Gonzalez et al. JOURNAL OF ANIMAL ECOLOGY
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Discovery of carbamate degrading enzymes by functional metagenomics
- (2017) Lisa Ufarté et al. PLoS One
- Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
- (2017) Mathieu Groussin et al. Nature Communications
- Marine Mammal Microbiota Yields Novel Antibiotic with Potent Activity Against Clostridium difficile
- (2017) Jessica L. Ochoa et al. ACS Infectious Diseases
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Discovery of tauroursodeoxycholic acid biotransformation enzymes from the gut microbiome of black bears using metagenomics
- (2017) Can Song et al. Scientific Reports
- Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta)
- (2016) Genevieve Bennett et al. AMERICAN JOURNAL OF PRIMATOLOGY
- Metagenomic mining of glycoside hydrolases from the hindgut bacterial symbionts of a termite (Trinervitermes trinervoides ) and the characterization of a multimodular β-1,4-xylanase (GH11)
- (2016) Konanani Rashamuse et al. BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY
- Growing up in a Bubble: Using Germ-Free Animals to Assess the Influence of the Gut Microbiota on Brain and Behavior
- (2016) Pauline Luczynski et al. INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY
- Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown
- (2016) Timothy J. Colston et al. MOLECULAR ECOLOGY
- Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior
- (2016) Mar Gacias et al. eLife
- Social behavior shapes the chimpanzee pan-microbiome
- (2016) A. H. Moeller et al. Science Advances
- Dietary resources shape the adaptive changes of cyanide detoxification function in giant panda (Ailuropoda melanoleuca)
- (2016) He Huang et al. Scientific Reports
- MetaQUAST: evaluation of metagenome assemblies
- (2015) Alla Mikheenko et al. BIOINFORMATICS
- Personalized Nutrition by Prediction of Glycemic Responses
- (2015) David Zeevi et al. CELL
- DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents
- (2015) C M Lopes et al. HEREDITY
- FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
- (2015) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
- DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
- (2015) Tyler R. Kartzinel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Analysis of Principal Components Can be Misleading
- (2015) Josef C. Uyeda et al. SYSTEMATIC BIOLOGY
- Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
- (2015) Jon G. Sanders et al. Nature Communications
- Social networks predict gut microbiome composition in wild baboons
- (2015) Jenny Tung et al. eLife
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- The Tasmanian devil microbiome—implications for conservation and management
- (2015) Yuanyuan Cheng et al. Microbiome
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning
- (2014) Afiahayati et al. DNA RESEARCH
- Artificial sweeteners induce glucose intolerance by altering the gut microbiota
- (2014) Jotham Suez et al. NATURE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Characterization of the Gut Microbiota in the Red Panda (Ailurus fulgens)
- (2014) Fanli Kong et al. PLoS One
- The microbiome of New World vultures
- (2014) Michael Roggenbuck et al. Nature Communications
- High Potential Source for Biomass Degradation Enzyme Discovery and Environmental Aspects Revealed through Metagenomics of Indian Buffalo Rumen
- (2014) K. M. Singh et al. Biomed Research International
- Microbial diversity associated with tetrodotoxin production in marine organisms
- (2013) V. Pratheepa et al. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY
- Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
- (2013) Katherine R Amato et al. ISME Journal
- DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
- (2013) M. De Barba et al. Molecular Ecology Resources
- The alligator gut microbiome and implications for archosaur symbioses
- (2013) Sarah W. Keenan et al. Scientific Reports
- Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
- (2012) Sheila Marie Pimentel-Elardo et al. Marine Drugs
- The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria
- (2012) Emma Ransom-Jones et al. MICROBIAL ECOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Animal Behavior and the Microbiome
- (2012) V. O. Ezenwa et al. SCIENCE
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- The intestinal microbiome of the pig
- (2012) Richard Isaacson et al. ANIMAL HEALTH RESEARCH REVIEWS
- Who is eating what: diet assessment using next generation sequencing
- (2011) FRANCOIS POMPANON et al. MOLECULAR ECOLOGY
- Evidence of cellulose metabolism by the giant panda gut microbiome
- (2011) L. Zhu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
- (2011) B. D. Muegge et al. SCIENCE
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
- (2010) Sriram Kosuri et al. NATURE BIOTECHNOLOGY
- Bioluminescence in the Ocean: Origins of Biological, Chemical, and Ecological Diversity
- (2010) E. A. Widder SCIENCE
- Mercury bioaccumulation and trophic transfer in the terrestrial food web of a montane forest
- (2009) Christopher C. Rimmer et al. ECOTOXICOLOGY
- SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES
- (2009) Liam J. Revell EVOLUTION
- Hypersensitivity to contact inhibition provides a clue to cancer resistance of naked mole-rat
- (2009) A. Seluanov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
- (2009) Jennifer M. Brulc et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
- (2008) H. Noguchi et al. DNA RESEARCH
- Evolution of Mammals and Their Gut Microbes
- (2008) R. E. Ley et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started