Population genomic, climatic and anthropogenic evidence suggest the role of human forces in endangerment of green peafowl ( Pavo muticus )

Determinants of genetic variation across eco-evolutionary scales in pinnipeds

(2020) Claire R. Peart et al.   Nature Ecology & Evolution

The Genomic Footprints of the Fall and Recovery of the Crested Ibis

(2019) Shaohong Feng et al.   CURRENT BIOLOGY

Archaeological assessment reveals Earth’s early transformation through land use

(2019) Lucas Stephens et al.   SCIENCE

Modelling occurrence probability of the Endangered green peafowl Pavo muticus in mainland South-east Asia: applications for landscape conservation and management

(2019) Niti Sukumal et al.   ORYX

Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil

(2019) Yun-Peng Zhao et al.   Nature Communications

Genomic Analysis of Demographic History and Ecological Niche Modeling in the Endangered Sumatran Rhinoceros Dicerorhinus sumatrensis

(2018) Herman L. Mays et al.   CURRENT BIOLOGY

Status and distribution changes of the endangered Green Peafowl (Pavo muticus) in China over the past three decades (1990s‒2017)

(2018) Dejun Kong et al.   Avian Research

Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms

(2018) Annabel C. Beichman et al.   Annual Review of Ecology Evolution and Systematics

On the path to extinction: Inbreeding and admixture in a declining grey wolf population

(2018) Daniel Gómez-Sánchez et al.   MOLECULAR ECOLOGY

Genome Sequence of Peacock Reveals the Peculiar Case of a Glittering Bird

(2018) Shubham K. Jaiswal et al.   Frontiers in Genetics

Biodiversity losses and conservation responses in the Anthropocene

(2017) Christopher N. Johnson et al.   SCIENCE

Understanding the drivers of Southeast Asian biodiversity loss

(2017) Alice C. Hughes   Ecosphere

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

Large numbers of vertebrates began rapid population decline in the late 19th century

(2016) Haipeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological consequences of human niche construction: Examining long-term anthropogenic shaping of global species distributions

(2016) Nicole L. Boivin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

(2016) Simon Boitard et al.   PLoS Genetics

Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences

(2015) Krystyna Nadachowska-Brzyska et al.   CURRENT BIOLOGY

Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution

(2015) Alison E. Wright et al.   MOLECULAR ECOLOGY

Exploring population size changes using SNP frequency spectra

(2015) Xiaoming Liu et al.   NATURE GENETICS

Accelerated modern human-induced species losses: Entering the sixth mass extinction

(2015) G. Ceballos et al.   Science Advances

Spatial filtering to reduce sampling bias can improve the performance of ecological niche models

(2014) Robert A. Boria et al.   ECOLOGICAL MODELLING

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Sea level and global ice volumes from the Last Glacial Maximum to the Holocene

(2014) K. Lambeck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drastic population fluctuations explain the rapid extinction of the passenger pigeon

(2014) C.-M. Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global late Quaternary megafauna extinctions linked to humans, not climate change

(2014) C. Sandom et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Threat of Disease Increases as Species Move Toward Extinction

(2013) MATTHEW J. HEARD et al.   CONSERVATION BIOLOGY

Gene flow maintains genetic diversity and colonization potential in recently range-expanded populations of an Oriental bird, the Light-vented Bulbul (Pycnonotus sinensis, Aves: Pycnonotidae)

(2013) Gang Song et al.   DIVERSITY AND DISTRIBUTIONS

Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach

(2013) S. Sheehan et al.   GENETICS

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Consequences of Range Contractions and Range Shifts on Molecular Diversity

(2011) Miguel Arenas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS