eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in Germany

Invasion genetics of the silver carp Hypophthalmichthys molitrix across North America: Differentiation of fronts, introgression, and eDNA metabarcode detection

(2019) Carol A. Stepien et al.   PLoS One

Using eDNA to biomonitor the fish community in a tropical oligotrophic lake

(2019) Martha Valdez-Moreno et al.   PLoS One

Environmental DNA assays for invasive populations of the Black Carp, Mylopharyngodon piceus, in North America

(2019) Xin Guan et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity

(2018) Anaïs Lacoursière-Roussel et al.   Ecology and Evolution

Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations

(2018) ME Hunter et al.   Endangered Species Research

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

(2018) Didier Pont et al.   Scientific Reports

Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes

(2017) Katy E. Klymus et al.   PLoS One

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Controls on eDNA movement in streams: Transport, Retention, and Resuspension

(2017) Arial J. Shogren et al.   Scientific Reports

22How to tackle the molecular species inventory for an industrialized nation—lessons from the first phase of the German Barcode of Life initiative GBOL (2012–2015)

(2016) M.F. Geiger et al.   GENOME

In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River

(2016) M. V. Cannon et al.   Scientific Reports

The downside of eDNA as a survey tool in water bodies

(2015) Jean-Marc Roussel et al.   JOURNAL OF APPLIED ECOLOGY

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Fish assemblage patterns in the Elbe estuary: guild composition, spatial and temporal structure, and influence of environmental factors

(2014) Dennis Eick et al.   Marine Biodiversity

Molecular-based rapid inventories of sympatric diversity: A comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of amphibians

(2012) Andrea Paz et al.   JOURNAL OF BIOSCIENCES

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

A decade’s perspective on DNA sequencing technology

(2011) Elaine R. Mardis   NATURE

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies

(2009) CORY S. SHEFFIELD et al.   Molecular Ecology Resources