Optogenetic fUSI for brain-wide mapping of neural activity mediating collicular-dependent behaviors

Transfer functions linking neural calcium to single voxel functional ultrasound signal

(2020) Ali-Kemal Aydin et al.   Nature Communications

A High-Dimensional Quantification of Mouse Defensive Behaviors Reveals Enhanced Diversity and Stimulus Specificity

(2020) Riccardo Storchi et al.   CURRENT BIOLOGY

fMRI detects bilateral brain network activation following unilateral chemogenetic activation of direct striatal projection neurons

(2020) Yuki Nakamura et al.   NEUROIMAGE

A Platform for Brain-wide Volumetric Functional Ultrasound Imaging and Analysis of Circuit Dynamics in Awake Mice

(2020) Clément Brunner et al.   NEURON

A collicular visual cortex: Neocortical space for an ancient midbrain visual structure

(2019) Riccardo Beltramo et al.   SCIENCE

Topological Organization of Ventral Tegmental Area Connectivity Revealed by Viral-Genetic Dissection of Input-Output Relations

(2019) Kevin T. Beier et al.   Cell Reports

Fast near-whole–brain imaging in adult Drosophila during responses to stimuli and behavior

(2019) Sophie Aimon et al.   PLOS BIOLOGY

Higher-Order Thalamic Circuits Channel Parallel Streams of Visual Information in Mice

(2019) Corbett Bennett et al.   NEURON

Superior Colliculus GABAergic Neurons Are Essential for Acute Dark Induction of Wakefulness in Mice

(2019) Ze Zhang et al.   CURRENT BIOLOGY

Spontaneous behaviors drive multidimensional, brainwide activity

(2019) Carsen Stringer et al.   SCIENCE

Genetically Defined Functional Modules for Spatial Orienting in the Mouse Superior Colliculus

(2019) Laura Masullo et al.   CURRENT BIOLOGY

GABAergic cell types in the superficial layers of the mouse superior colliculus

(2019) Kyle L. Whyland et al.   JOURNAL OF COMPARATIVE NEUROLOGY

4D functional ultrasound imaging of whole-brain activity in rodents

(2019) Claire Rabut et al.   NATURE METHODS

Distributed coding of choice, action and engagement across the mouse brain

(2019) Nicholas A. Steinmetz et al.   NATURE

A projection specific logic to sampling visual inputs in mouse superior colliculus

(2019) Katja Reinhard et al.   eLife

Defined Cell Types in Superior Colliculus Make Distinct Contributions to Prey Capture Behavior in the Mouse

(2019) Jennifer L. Hoy et al.   CURRENT BIOLOGY

Distinct cell types in the superficial superior colliculus project to the dorsal lateral geniculate and lateral posterior thalamic nuclei

(2018) Samuel D Gale et al.   JOURNAL OF NEUROPHYSIOLOGY

A neuronal basis for fear discrimination in the lateral amygdala

(2018) Anna Grosso et al.   Nature Communications

Divergent midbrain circuits orchestrate escape and freezing responses to looming stimuli in mice

(2018) Congping Shang et al.   Nature Communications

A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo

(2018) Pierre Yger et al.   eLife

The logic of single-cell projections from visual cortex

(2018) Yunyun Han et al.   NATURE

A midline thalamic circuit determines reactions to visual threat

(2018) Lindsey D. Salay et al.   NATURE

A synaptic threshold mechanism for computing escape decisions

(2018) Dominic A. Evans et al.   NATURE

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Whole-Brain Functional Ultrasound Imaging Reveals Brain Modules for Visuomotor Integration

(2018) Émilie Macé et al.   NEURON

Locomotor speed control circuits in the caudal brainstem

(2017) Paolo Capelli et al.   NATURE

A competitive inhibitory circuit for selection of active and passive fear responses

(2017) Jonathan P. Fadok et al.   NATURE

Fully integrated silicon probes for high-density recording of neural activity

(2017) James J. Jun et al.   NATURE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Studying Brain Circuit Function with Dynamic Causal Modeling for Optogenetic fMRI

(2017) David Bernal-Casas et al.   NEURON

Modulation of SF1 Neuron Activity Coordinately Regulates Both Feeding Behavior and Associated Emotional States

(2017) Paulius Viskaitis et al.   Cell Reports

Diverse Central Projection Patterns of Retinal Ganglion Cells

(2017) Emily M. Martersteck et al.   Cell Reports

Causal role for the subthalamic nucleus in interrupting behavior

(2017) Kathryn H Fife et al.   eLife

Vision Guides Selection of Freeze or Flight Defense Strategies in Mice

(2016) Gioia De Franceschi et al.   CURRENT BIOLOGY

Feeding and Reward Are Differentially Induced by Activating GABAergic Lateral Hypothalamic Projections to VTA

(2016) M. F. Barbano et al.   JOURNAL OF NEUROSCIENCE

Active Dendritic Properties and Local Inhibitory Input Enable Selectivity for Object Motion in Mouse Superior Colliculus Neurons

(2016) S. D. Gale et al.   JOURNAL OF NEUROSCIENCE

The functional diversity of retinal ganglion cells in the mouse

(2016) Tom Baden et al.   NATURE

Activation of Direct and Indirect Pathway Medium Spiny Neurons Drives Distinct Brain-wide Responses

(2016) Hyun Joo Lee et al.   NEURON

An integrative role for the superior colliculus in selecting targets for movements

(2015) Andrew B. Wolf et al.   JOURNAL OF NEUROPHYSIOLOGY

Neurons in the Most Superficial Lamina of the Mouse Superior Colliculus Are Highly Selective for Stimulus Direction

(2015) S. Inayat et al.   JOURNAL OF NEUROSCIENCE

Optogenetic fMRI reveals distinct, frequency-dependent networks recruited by dorsal and intermediate hippocampus stimulations

(2015) Andrew J. Weitz et al.   NEUROIMAGE

A parvalbumin-positive excitatory visual pathway to trigger fear responses in mice

(2015) C. Shang et al.   SCIENCE

Processing of visually evoked innate fear by a non-canonical thalamic pathway

(2015) Pengfei Wei et al.   Nature Communications

A Diencephalic Dopamine Source Provides Input to the Superior Colliculus, where D1 and D2 Receptors Segregate to Distinct Functional Zones

(2015) Andrew D. Bolton et al.   Cell Reports

Bonsai: an event-based framework for processing and controlling data streams

(2015) Gonçalo Lopes et al.   Frontiers in Neuroinformatics

Distinct Representation and Distribution of Visual Information by Specific Cell Types in Mouse Superficial Superior Colliculus

(2014) S. D. Gale et al.   JOURNAL OF NEUROSCIENCE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Multisensory Integration in the Mouse Striatum

(2014) Ramon Reig et al.   NEURON

Rapid Innate Defensive Responses of Mice to Looming Visual Stimuli

(2013) Melis Yilmaz et al.   CURRENT BIOLOGY

Functional ultrasound imaging of the brain: theory and basic principles

(2013) Emilie Mace et al.   IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL

GENSAT BAC Cre-Recombinase Driver Lines to Study the Functional Organization of Cerebral Cortical and Basal Ganglia Circuits

(2013) Charles R. Gerfen et al.   NEURON

Brain-wide neuronal dynamics during motor adaptation in zebrafish

(2012) Misha B. Ahrens et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing

(2012) Linda Madisen et al.   NATURE NEUROSCIENCE

The many paths to fear

(2012) Cornelius T. Gross et al.   NATURE REVIEWS NEUROSCIENCE

A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex

(2011) Hiroki Taniguchi et al.   NEURON

In Vivo Mapping of Brain Elasticity in Small Animals Using Shear Wave Imaging

(2010) E Macé et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Interactions between the midbrain superior colliculus and the basal ganglia

(2010) Peter Redgrave   Frontiers in Neuroanatomy

One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application

(2010) Hermann Cuntz et al.   PLoS Computational Biology

How and when the fMRI BOLD signal relates to underlying neural activity: The danger in dissociation

(2009) Arne Ekstrom   BRAIN RESEARCH REVIEWS

Short-Latency Activation of Striatal Spiny Neurons via Subcortical Visual Pathways

(2009) J. M. Schulz et al.   JOURNAL OF NEUROSCIENCE

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE