A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum

The Vta1 transcriptional regulator is required for microsclerotia melanization in Verticillium dahliae

(2020) Rebekka Harting et al.   Fungal Biology

Pathogenic Allodiploid Hybrids of Aspergillus Fungi

(2020) Jacob L. Steenwyk et al.   CURRENT BIOLOGY

Exploring whole-genome duplicate gene retention with complex genetic interaction analysis

(2020) Elena Kuzmin et al.   SCIENCE

Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments

(2020) Miriam Leonard et al.   Frontiers in Microbiology

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium

(2020) Michael F. Seidl et al.   mBio

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen

(2020) David E Cook et al.   eLife

Transcriptome analysis reveals downregulation of virulence-associated genes expression in a low virulence Verticillium dahliae strain

(2019) Lirong Jin et al.   ARCHIVES OF MICROBIOLOGY

Dynamic virulence‐related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation

(2019) Jasper R. L. Depotter et al.   MOLECULAR ECOLOGY

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

(2018) Clémence Plissonneau et al.   BMC BIOLOGY

Analysis of the hybrid genomes of two field isolates of the soil-borne fungal species Verticillium longisporum

(2018) Johan Fogelqvist et al.   BMC GENOMICS

Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss

(2018) Xiaoqian Shi-Kunne et al.   ENVIRONMENTAL MICROBIOLOGY

Transcription factor VdCmr1 is required for pigment production, protection from UV irradiation, and regulates expression of melanin biosynthetic genes in Verticillium dahliae

(2018) Yonglin Wang et al.   MICROBIOLOGY-SGM

Verticillium dahliae transcription factors Som1 and Vta3 control microsclerotia formation and sequential steps of plant root penetration and colonisation to induce disease

(2018) Tri-Thuc Bui et al.   NEW PHYTOLOGIST

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

A distinct and genetically diverse lineage of the hybrid fungal pathogen Verticillium longisporum population causes stem striping in British oilseed rape

(2017) Jasper R. L. Depotter et al.   ENVIRONMENTAL MICROBIOLOGY

A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements

(2017) Fanny E Hartmann et al.   ISME Journal

Verticillium dahliaeLysM effectors differentially contribute to virulence on plant hosts

(2017) Anja Kombrink et al.   MOLECULAR PLANT PATHOLOGY

Evolution and genome architecture in fungal plant pathogens

(2017) Mareike Möller et al.   NATURE REVIEWS MICROBIOLOGY

Comparative genomics reveals cotton-specific virulence factors in flexible genomic regions in Verticillium dahliae and evidence of horizontal gene transfer from Fusarium

(2017) Jie-Yin Chen et al.   NEW PHYTOLOGIST

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

(2017) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

The Emerging British Verticillium longisporum Population Consists of Aggressive Brassica Pathogens

(2017) Jasper R. L. Depotter et al.   PHYTOPATHOLOGY

Transposable Elements Direct The Coevolution between Plants and Microbes

(2017) Michael F. Seidl et al.   TRENDS IN GENETICS

Interspecific hybridization impacts host range and pathogenicity of filamentous microbes

(2016) Jasper RL Depotter et al.   CURRENT OPINION IN MICROBIOLOGY

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen

(2016) Luigi Faino et al.   GENOME RESEARCH

Elucidating the Role of Effectors in Plant-Fungal Interactions: Progress and Challenges

(2016) Carrie Selin et al.   Frontiers in Microbiology

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The Three Lineages of the Diploid Hybrid Verticillium longisporum Differ in Virulence and Pathogenicity

(2015) Fluturë Novakazi et al.   PHYTOPATHOLOGY

Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome

(2015) Luigi Faino et al.   mBio

Sex or no sex: Evolutionary adaptation occurs regardless

(2014) Michael F. Seidl et al.   BIOESSAYS

Variability of chromosome structure in pathogenic fungi—of ‘ends and odds’

(2014) Jonathan M Galazka et al.   CURRENT OPINION IN MICROBIOLOGY

Gene Loss Rather Than Gene Gain Is Associated with a Host Jump from Monocots to Dicots in the Smut Fungus Melanopsichium pennsylvanicum

(2014) Rahul Sharma et al.   Genome Biology and Evolution

Microbiology: Ditch the term pathogen

(2014) Arturo Casadevall et al.   NATURE

Verticilliumtranscription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots

(2014) Van-Tuan Tran et al.   NEW PHYTOLOGIST

Recombination between Clonal Lineages of the Asexual Fungus Verticillium dahliae Detected by Genotyping by Sequencing

(2014) Michael G. Milgroom et al.   PLoS One

Maintenance of Sex-Related Genes and the Co-Occurrence of Both Mating Types in Verticillium dahliae

(2014) Dylan P. G. Short et al.   PLoS One

Gene Copy-Number Alterations: A Cost-Benefit Analysis

(2013) Yun-Chi Tang et al.   CELL

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

(2013) R. de Jonge et al.   GENOME RESEARCH

Identification and Differentiation of Verticillium Species and V. longisporum Lineages by Simplex and Multiplex PCR Assays

(2013) Patrik Inderbitzin et al.   PLoS One

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

(2013) Stefanie Traeger et al.   PLoS Genetics

Molecular diagnosis to discriminate pathogen and apathogen species of the hybrid Verticillium longisporum on the oilseed crop Brassica napus

(2012) Van Tuan Tran et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

(2012) Ines Teichert et al.   BMC GENOMICS

Evolutionary Role of Interspecies Hybridization and Genetic Exchanges in Yeasts

(2012) Lucia Morales et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Verticillium dahliae Sge1 Differentially Regulates Expression of Candidate Effector Genes

(2012) Parthasarathy Santhanam et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Verticillium Infection Triggers VASCULAR-RELATED NAC DOMAIN7-Dependent de Novo Xylem Formation and Enhances Drought Tolerance in Arabidopsis

(2012) M. Reusche et al.   PLANT CELL

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

(2012) E. H. Stukenbrock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing

(2012) R. de Jonge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription Factor Amr1 Induces Melanin Biosynthesis and Suppresses Virulence in Alternaria brassicicola

(2012) Yangrae Cho et al.   PLoS Pathogens

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

The Ascomycete Verticillium longisporum Is a Hybrid and a Plant Pathogen with an Expanded Host Range

(2011) Patrik Inderbitzin et al.   PLoS One

Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species

(2011) Patrik Inderbitzin et al.   PLoS One

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens

(2011) Steven J. Klosterman et al.   PLoS Pathogens

A novel class of peptide pheromone precursors in ascomycetous fungi

(2010) Monika Schmoll et al.   MOLECULAR MICROBIOLOGY

De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis

(2010) Minou Nowrousian et al.   PLoS Genetics

Monitoring of pathogenic and non-pathogenic Fusarium oxysporum strains during tomato plant infection

(2010) Shamil Z. Validov et al.   Microbial Biotechnology

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

Silencing of Vlaro2 for chorismate synthase revealed that the phytopathogen Verticillium longisporum induces the cross-pathway control in the xylem

(2009) Seema Singh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genetic Dissection of Verticillium Wilt Resistance Mediated by Tomato Ve1

(2009) E. F. Fradin et al.   PLANT PHYSIOLOGY

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Direct molecular evidence supports long-spored microsclerotial isolates ofVerticilliumfrom crucifers being interspecific hybrids

(2008) E. Clewes et al.   PLANT PATHOLOGY