Cross‐species transcriptomics uncovers genes underlying genetic accommodation of developmental plasticity in spadefoot toads

Phenotypic Plasticity: From Theory and Genetics to Current and Future Challenges

(2020) Ralf J. Sommer   GENETICS

Nutrition-responsive gene expression and the developmental evolution of insect polyphenism

(2020) Sofia Casasa et al.   Nature Ecology & Evolution

On the Reciprocally Causal and Constructive Nature of Developmental Plasticity and Robustness

(2019) Daniel B. Schwab et al.   Frontiers in Genetics

Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode Caenorhabditis remanei

(2019) Kristin L. Sikkink et al.   G3-Genes Genomes Genetics

Genetic basis of amphibian larval development along a latitudinal gradient: gene diversity, selection and links with phenotypic variation in transcription factor C/ EBP ‐1

(2019) Yvonne Meyer‐Lucht et al.   MOLECULAR ECOLOGY

Insufficiency of Thyroid Hormone in Frog Metamorphosis and the Role of Glucocorticoids

(2019) Laurent M. Sachs et al.   Frontiers in Endocrinology

De Novo Assembly and Annotation of the Larval Transcriptome of Two Spadefoot Toads Widely Divergent in Developmental Rate

(2019) H. Christoph Liedtke et al.   G3-Genes Genomes Genetics

Genomics of Developmental Plasticity in Animals

(2019) Elvira Lafuente et al.   Frontiers in Genetics

The role of ancestral phenotypic plasticity in evolutionary diversification: population density effects in horned beetles

(2018) Sofia Casasa et al.   ANIMAL BEHAVIOUR

Tumor suppressive role for kinases phosphorylating p53 in the DNA damage-induced apoptosis

(2018) Satomi Yogosawa et al.   CANCER SCIENCE

Macroevolutionary shift in the size of amphibian genomes and the role of life history and climate

(2018) H. Christoph Liedtke et al.   Nature Ecology & Evolution

Genetic accommodation via modified endocrine signalling explains phenotypic divergence among spadefoot toad species

(2017) Saurabh S. Kulkarni et al.   Nature Communications

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Phenotypic plasticity and modularity allow for the production of novel mosaic phenotypes in ants

(2015) Sylvain Londe et al.   EvoDevo

The trajectory of life. Decreasing physiological network complexity through changing fractal patterns

(2015) Joachim P. Sturmberg et al.   Frontiers in Physiology

Deficiency of cystathionine gamma-lyase and hepatic cholesterol accumulation during mouse fatty liver development

(2015) Sarathi Mani et al.   Science Bulletin

PHENOTYPIC PLASTICITY AND EPIGENETIC MARKING: AN ASSESSMENT OF EVIDENCE FOR GENETIC ACCOMMODATION

(2014) Carl D. Schlichting et al.   EVOLUTION

Corticosteroid signaling in frog metamorphosis

(2014) Saurabh S. Kulkarni et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish

(2014) Ralf F. Schneider et al.   MOLECULAR ECOLOGY

Evolution of Rapid Development in Spadefoot Toads Is Unrelated to Arid Environments

(2014) Cen Zeng et al.   PLoS One

Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands

(2013) Alex Richter-Boix et al.   MOLECULAR ECOLOGY

Linking conceptual mechanisms and transcriptomic evidence of plasticity-driven diversification

(2013) Rebecca L. Young   MOLECULAR ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Mechanisms and Consequences of Developmental Acceleration in Tadpoles Responding to Pond Drying

(2013) Ivan Gomez-Mestre et al.   PLoS One

A heuristic model on the role of plasticity in adaptive evolution: plasticity increases adaptation, population viability and genetic variation

(2013) I. Gomez-Mestre et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PHENOTYPIC PLASTICITY FACILITATES MUTATIONAL VARIANCE, GENETIC VARIANCE, AND EVOLVABILITY ALONG THE MAJOR AXIS OF ENVIRONMENTAL VARIATION

(2012) Jeremy A. Draghi et al.   EVOLUTION

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Evolutionary reduction of developmental plasticity in desert spadefoot toads

(2011) S. S. KULKARNI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolution and molecular mechanisms of adaptive developmental plasticity

(2011) PATRÍCIA BELDADE et al.   MOLECULAR ECOLOGY

Loss of Individual MicroRNAs Causes Mutant Phenotypes in Sensitized Genetic Backgrounds in C. elegans

(2010) John L. Brenner et al.   CURRENT BIOLOGY

Phenotypic plasticity and diversity in insects

(2010) A. P. Moczek   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Apoptosis in amphibian organs during metamorphosis

(2009) Atsuko Ishizuya-Oka et al.   APOPTOSIS

Toward a population genetic framework of developmental evolution: the costs, limits, and consequences of phenotypic plasticity

(2009) Emilie C. Snell-Rood et al.   BIOESSAYS

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptional Regulation of Steroidogenic Genes: STARD1, CYP11A1 and HSD3B

(2009) Holly A. LaVoie et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Stressor and Glucocorticoid-Dependent Induction of the Immediate Early Gene Krüppel-Like Factor 9: Implications for Neural Development and Plasticity

(2008) Ronald M. Bonett et al.   ENDOCRINOLOGY