Deciphering core-microbiome of rice leaf endosphere: Revelation by metagenomic and microbiological analysis of aromatic and non-aromatic genotypes grown in three geographical zones

Biodiversity of methylotrophic microbial communities and their potential role in mitigation of abiotic stresses in plants

(2019) Manish Kumar et al.   BIOLOGIA

Phosphorus Input Alters the Assembly of Rice (Oryza sativa L.) Root-Associated Communities

(2019) Xi-En Long et al.   MICROBIAL ECOLOGY

Alterations in the Endophyte-Enriched Root-Associated Microbiome of Rice Receiving Growth-Promoting Treatments of Urea Fertilizer and Rhizobium Biofertilizer

(2019) Prabhat N. Jha et al.   MICROBIAL ECOLOGY

Endophytic bacteria of desert cactus (Euphorbia trigonas Mill) confer drought tolerance and induce growth promotion in tomato (Solanum lycopersicum L.)

(2019) Pierre Eke et al.   MICROBIOLOGICAL RESEARCH

Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot

(2019) Garima Raj et al.   BMC GENOMICS

Black pepper (Piper nigrum L.) associated endophytic Pseudomonas putida BP25 alters root phenotype and induces defense in rice (Oryza sativa L.) against blast disease incited by Magnaporthe oryzae

(2019) Mushineni Ashajyothi et al.   BIOLOGICAL CONTROL

Environmental factors shaping the diversity of bacterial communities that promote rice production

(2018) Zhaohui Wu et al.   BMC MICROBIOLOGY

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

Bacterial diversity associated with poplar trees grown on a Hg-contaminated site: Community characterization and isolation of Hg-resistant plant growth-promoting bacteria

(2018) Alexis Durand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection

(2018) Wei Gu et al.   Annual Review of Pathology-Mechanisms of Disease

Foliar fungal endophyte communities are structured by environment but not host ecotype in Panicum virgatum (switchgrass)

(2018) Briana K. Whitaker et al.   ECOLOGY

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes

(2017) Christian Santos-Medellín et al.   mBio

Genotyping and identification of broad spectrum antimicrobial volatiles in black pepper root endophytic biocontrol agent, Bacillus megaterium BP17

(2016) Vibhuti Munjal et al.   BIOLOGICAL CONTROL

Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice ( Oryza sativa L.)

(2016) Wenfeng Wang et al.   MICROBIOLOGICAL RESEARCH

Pseudomonas putida BP25 alters root phenotype and triggers salicylic acid signaling as a feedback loop in regulating endophytic colonization in Arabidopsis thaliana

(2016) Neelam Sheoran et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Rice bacterial endophytes: isolation of a collection, identification of beneficial strains and microbiome analysis

(2016) Iris Bertani et al.   Environmental Microbiology Reports

Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies

(2016) Bram Beckers et al.   Frontiers in Microbiology

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic analysis of plant endophytic Pseudomonas putida BP25 and chemo-profiling of its antimicrobial volatile organic compounds

(2015) Neelam Sheoran et al.   MICROBIOLOGICAL RESEARCH

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding and engineering beneficial plant-microbe interactions: plant growth promotion in energy crops

(2014) Kerrie Farrar et al.   PLANT BIOTECHNOLOGY JOURNAL

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Viral pathogen discovery

(2013) Charles Y Chiu   CURRENT OPINION IN MICROBIOLOGY

Progress in cultivation-independent phyllosphere microbiology

(2013) Thomas Müller et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of Plant Genotype and Nitrogen Level on Bacterial Communities in Rice Shoots and Roots

(2013) Kazuhiro Sasaki et al.   MICROBES AND ENVIRONMENTS

Long-Term Rice and Green Manure Rotation Alters the Endophytic Bacterial Communities of the Rice Root

(2013) Xiao-Xia Zhang et al.   MICROBIAL ECOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Defining the human microbiome

(2012) Luke K Ursell et al.   NUTRITION REVIEWS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Next-generation sequencing in molecular diagnosis:NUBPLmutations highlight the challenges of variant detection and interpretation

(2011) Elena J. Tucker et al.   HUMAN MUTATION

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Rice Seeds as Sources of Endophytic Bacteria

(2009) Hiroko Kaga et al.   MICROBES AND ENVIRONMENTS

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endophytic bacterial flora in root and stem tissues of black pepper (Piper nigrumL.) genotype: isolation, identification and evaluation againstPhytophthora capsici

(2008) R. Aravind et al.   LETTERS IN APPLIED MICROBIOLOGY

Endophytic Bacteria in the Rice Plant

(2008) Hironobu Mano et al.   MICROBES AND ENVIRONMENTS

A simple and rapid method for extracting bacterial DNA from intestinal microflora for ERIC-PCR detection

(2008) Jin-Long Yang et al.   WORLD JOURNAL OF GASTROENTEROLOGY