Pathway discovery and engineering for cleavage of a β-1 lignin-derived biaryl compound

Bacterial enzymes for lignin depolymerisation: new biocatalysts for generation of renewable chemicals from biomass

(2020) Timothy D.H. Bugg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

(2020) Davinia Salvachúa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploiting the dynamic relationship between peptide separation quality and peptide co-isolation in a mPSM approach offers a new strategy to optimize bottom-up proteomics throughput and depth

(2019) Manuel I. Villalobos Solis et al.   ANALYTICAL CHEMISTRY

A field of dreams: Lignin valorization into chemicals, materials, fuels, and health-care products

(2019) Judith Becker et al.   BIOTECHNOLOGY ADVANCES

Lignin structure and its engineering

(2019) John Ralph et al.   CURRENT OPINION IN BIOTECHNOLOGY

Differences in S/G ratio in natural poplar variants do not predict catalytic depolymerization monomer yields

(2019) Eric M. Anderson et al.   Nature Communications

Identification of functionally important residues and structural features in a bacterial lignostilbene dioxygenase

(2019) Eugene Kuatsjah et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Passive membrane transport of lignin-related compounds

(2019) Josh V. Vermaas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novosphingobium aromaticivoransuses a Nu-class glutathioneS-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin

(2018) Wayne S. Kontur et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction

(2018) Viktoria Dorfer et al.   JOURNAL OF PROTEOME RESEARCH

From lignin to nylon: Cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida

(2018) Michael Kohlstedt et al.   METABOLIC ENGINEERING

Selective Cleavage of Lignin β-O-4 Aryl Ether Bond by β-Etherase of the White-Rot Fungus Dichomitus squalens

(2018) Mila Marinović et al.   ACS Sustainable Chemistry & Engineering

Rapid, parallel identification of pathways for catabolism of lignin-derived aromatic compounds in Novosphingobium aromaticivorans

(2018) Jacob H. Cecil et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5′-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6

(2018) Kosuke Mori et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Advances in microbial lignin degradation and its applications

(2018) Naofumi Kamimura et al.   CURRENT OPINION IN BIOTECHNOLOGY

Bioprivileged molecules: creating value from biomass

(2017) Brent H. Shanks et al.   GREEN CHEMISTRY

Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism

(2017) Naofumi Kamimura et al.   Environmental Microbiology Reports

Selective Copper–N-Heterocyclic Carbene (Copper-NHC)-Catalyzed Aerobic Cleavage of β-1 Lignin Models to Aldehydes

(2017) Zhong-zhen Zhou et al.   ACS Catalysis

Glucose-Free cis,cis-Muconic Acid Production via New Metabolic Designs Corresponding to the Heterogeneity of Lignin

(2017) Tomonori Sonoki et al.   ACS Sustainable Chemistry & Engineering

Paving the Way for Lignin Valorisation: Recent Advances in Bioengineering, Biorefining and Catalysis

(2016) Roberto Rinaldi et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Biological valorization of low molecular weight lignin

(2016) Omar Y. Abdelaziz et al.   BIOTECHNOLOGY ADVANCES

Opportunities and challenges in biological lignin valorization

(2016) Gregg T Beckham et al.   CURRENT OPINION IN BIOTECHNOLOGY

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway fromSphingobiumsp. SYK-6

(2016) Jose Henrique Pereira et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase

(2016) Ryan P. McAndrew et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Renewable Unsaturated Polyesters from Muconic Acid

(2016) Nicholas A. Rorrer et al.   ACS Sustainable Chemistry & Engineering

Production of Diethyl Terephthalate from Biomass-Derived Muconic Acid

(2015) Rui Lu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Phylogenetic and Kinetic Characterization of a Suite of Dehydrogenases from a Newly Isolated Bacterium, Strain SG61-1L, That Catalyze the Turnover of Guaiacylglycerol-β-Guaiacyl Ether Stereoisomers

(2015) Shannu Palamuru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enzymatic conversion of lignin into renewable chemicals

(2015) Timothy DH Bugg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Reductive lignocellulose fractionation into soluble lignin-derived phenolic monomers and dimers and processable carbohydrate pulps

(2015) S. Van den Bosch et al.   Energy & Environmental Science

Adipic acid production from lignin

(2015) Derek R. Vardon et al.   Energy & Environmental Science

Lignin-degrading enzymes

(2015) Loredano Pollegioni et al.   FEBS Journal

Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin

(2015) Christopher W. Johnson et al.   METABOLIC ENGINEERING

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

(2015) Kelly M. Wetmore et al.   mBio

From gene to biorefinery: microbial β-etherases as promising biocatalysts for lignin valorization

(2015) Pere Picart et al.   Frontiers in Microbiology

Biotechnological production of muconic acid: current status and future prospects

(2014) Neng-Zhong Xie et al.   BIOTECHNOLOGY ADVANCES

Biotechnological domestication of pseudomonads using synthetic biology

(2014) Pablo I. Nikel et al.   NATURE REVIEWS MICROBIOLOGY

Lignin valorization through integrated biological funneling and chemical catalysis

(2014) J. G. Linger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lignin Valorization: Improving Lignin Processing in the Biorefinery

(2014) A. J. Ragauskas et al.   SCIENCE

Filling out the structural map of the NTF2-like superfamily

(2013) Ruth Y Eberhardt et al.   BMC BIOINFORMATICS

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens

(2013) Nigel F. Delaney et al.   PLoS One

Markerless Gene Deletion System for Sphingomonads

(2012) Andreas Kaczmarczyk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DanteR: an extensible R-based tool for quantitative analysis of -omics data

(2012) Tom Taverner et al.   BIOINFORMATICS

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

Microbial degradation of aromatic compounds — from one strategy to four

(2011) Georg Fuchs et al.   NATURE REVIEWS MICROBIOLOGY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals

(2010) Joseph Zakzeski et al.   CHEMICAL REVIEWS

Identification of Three Alcohol Dehydrogenase Genes Involved in the Stereospecific Catabolism of Arylglycerol- -Aryl Ether by Sphingobium sp. Strain SYK-6

(2009) Y. Sato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Identification of Bacterial Carotenoid Cleavage Dioxygenase Homologues That Cleave the Interphenyl α,β Double Bond of Stilbene Derivatives via a Monooxygenase Reaction

(2008) Erinn K. Marasco et al.   CHEMBIOCHEM