Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism

The crystal structure of a new O -demethylase from Sphingobium sp. strain SYK-6

(2017) Ayaka Harada et al.   FEBS Journal

Characterization of an extradiol dioxygenase involved in the catabolism of lignin-derived biphenyl

(2017) Eugene Kuatsjah et al.   FEBS LETTERS

The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the α/β-hydrolase superfamily

(2017) Eugene Kuatsjah et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structural basis for nutrient acquisition by dominant members of the human gut microbiota

(2017) Amy J. Glenwright et al.   NATURE

Structure of arylO-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism

(2017) Amanda C. Kohler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A bacterial aromatic aldehyde dehydrogenase critical for the efficient catabolism of syringaldehyde

(2017) Naofumi Kamimura et al.   Scientific Reports

Global transcriptomic analysis of the response of Corynebacterium glutamicum to ferulic acid

(2016) Can Chen et al.   ARCHIVES OF MICROBIOLOGY

Enzymatic Specific Production and Chemical Functionalization of Phenylpropanone Platform Monomers from Lignin

(2016) Yukari Ohta et al.   ChemSusChem

Systems biology-guided biodesign of consolidated lignin conversion

(2016) Lu Lin et al.   GREEN CHEMISTRY

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway fromSphingobiumsp. SYK-6

(2016) Jose Henrique Pereira et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial enzymes involved in lignin degradation

(2016) Gonzalo de Gonzalo et al.   JOURNAL OF BIOTECHNOLOGY

Substrate Distortion and the Catalytic Reaction Mechanism of 5-Carboxyvanillate Decarboxylase

(2016) Anna Vladimirova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tricin-lignins: occurrence and quantitation of tricin in relation to phylogeny

(2016) Wu Lan et al.   PLANT JOURNAL

Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase

(2016) Ryan P. McAndrew et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization

(2016) Arul M. Varman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cascade enzymatic cleavage of the β-O-4 linkage in a lignin model compound

(2016) Elena Rosini et al.   Catalysis Science & Technology

Monolignol ferulate conjugates are naturally incorporated into plant lignins

(2016) S. D. Karlen et al.   Science Advances

Global Transcriptomic Analysis of the Response of Corynebacterium glutamicum to Vanillin

(2016) Can Chen et al.   PLoS One

Structural Biology of the Major Facilitator Superfamily Transporters

(2015) Nieng Yan   Annual Review of Biophysics

Membrane-Associated Glucose-Methanol-Choline Oxidoreductase Family Enzymes PhcC and PhcD Are Essential for Enantioselective Catabolism of Dehydrodiconiferyl Alcohol

(2015) Kenji Takahashi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and Kinetic Characterization of a Suite of Dehydrogenases from a Newly Isolated Bacterium, Strain SG61-1L, That Catalyze the Turnover of Guaiacylglycerol-β-Guaiacyl Ether Stereoisomers

(2015) Shannu Palamuru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of the phd gene cluster responsible for phenylpropanoid utilization in Corynebacterium glutamicum

(2015) Nicolai Kallscheuer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterisation of Dyp-type peroxidases from Pseudomonas fluorescens Pf-5: Oxidation of Mn(II) and polymeric lignin by Dyp1B

(2015) Rahman Rahmanpour et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Exploring allosteric activation of LigAB from Sphingobium sp. strain SYK-6 through kinetics, mutagenesis and computational studies

(2015) Kevin Patrick Barry et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Lignin-degrading enzymes

(2015) Loredano Pollegioni et al.   FEBS Journal

Exploring glutathione lyases as biocatalysts: paving the way for enzymatic lignin depolymerization and future stereoselective applications

(2015) Pere Picart et al.   GREEN CHEMISTRY

Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin

(2015) Kate E. Helmich et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Theoretical study of the hydrolysis mechanism of 2-pyrone-4,6-dicarboxylate (PDC) catalyzed by LigI

(2015) Shujun Zhang et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism

(2015) Hiroshi Otani et al.   NUCLEIC ACIDS RESEARCH

Improving alternate lignin catabolite utilization of LigAB from Sphingobium sp. strain SYK-6 through site directed mutagenesis

(2015) Kevin Patrick Barry et al.   PROCESS BIOCHEMISTRY

Conserved movement of TMS11 between occluded conformations of LacY and XylE of the major facilitator superfamily suggests a similar hinge-like mechanism

(2015) Åke Västermark et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Functional characterization of a vanillin dehydrogenase in Corynebacterium glutamicum

(2015) Wei Ding et al.   Scientific Reports

Combination of six enzymes of a marine Novosphingobium converts the stereoisomers of β-O-4 lignin model dimers into the respective monomers

(2015) Yukari Ohta et al.   Scientific Reports

NADPH-generating systems in bacteria and archaea

(2015) Sebastiaan K. Spaans et al.   Frontiers in Microbiology

Biochemical Analysis of Recombinant AlkJ from Pseudomonas putida Reveals a Membrane-Associated, Flavin Adenine Dinucleotide-Dependent Dehydrogenase Suitable for the Biosynthetic Production of Aliphatic Aldehydes

(2014) Ludwig Kirmair et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporiopsis subvermispora during Growth on Aspen Wood Reveal This Organism's Strategy for Degrading Lignocellulose

(2014) Chiaki Hori et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three-ComponentO-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6

(2014) Taichi Yoshikata et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Successful expression of a novel bacterial gene for pinoresinol reductase and its effect on lignan biosynthesis in transgenic Arabidopsis thaliana

(2014) Masayuki Tamura et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of the catabolic pathway for a phenylcoumaran-type lignin-derived biaryl in Sphingobium sp. strain SYK-6

(2014) Kenji Takahashi et al.   BIODEGRADATION

Understanding lignin biodegradation for the improved utilization of plant biomass in modern biorefineries

(2014) Susana Camarero et al.   Biofuels Bioproducts & Biorefining-Biofpr

Expression and Substrate Range of Streptomyces Vanillate Demethylase

(2014) Motohiro Nishimura et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

From Gene Towards Selective Biomass Valorization: Bacterial β-Etherases with Catalytic Activity on Lignin-Like Polymers

(2014) Pere Picart et al.   ChemSusChem

A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers

(2014) Daniel L. Gall et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Transcriptional Regulation of the Vanillate Utilization Genes (vanABKOperon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor

(2014) Kambiz Morabbi Heravi et al.   JOURNAL OF BACTERIOLOGY

Characterization of p-Hydroxycinnamate Catabolism in a Soil Actinobacterium

(2014) H. Otani et al.   JOURNAL OF BACTERIOLOGY

Stereochemical Features of Glutathione-dependent Enzymes in theSphingobiumsp. Strain SYK-6 β-Aryl Etherase Pathway

(2014) Daniel L. Gall et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comprehensive proteome analysis of the response of Pseudomonas putida KT2440 to the flavor compound vanillin

(2014) Oliver Simon et al.   Journal of Proteomics

Proteomic Characterization of Plasmid pLA1 for Biodegradation of Polycyclic Aromatic Hydrocarbons in the Marine Bacterium, Novosphingobium pentaromativorans US6-1

(2014) Sung Ho Yun et al.   PLoS One

Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6

(2014) Keisuke Sugimoto et al.   PLoS One

Expression, purification and reconstitution of the 4-hydroxybenzoate transporter PcaK from Acinetobacter sp. ADP1

(2014) Christian Pernstich et al.   PROTEIN EXPRESSION AND PURIFICATION

The role of the secondary cell wall in plant resistance to pathogens

(2014) Eva Miedes et al.   Frontiers in Plant Science

Characterizing the Promiscuity of LigAB, a Lignin Catabolite Degrading Extradiol Dioxygenase from Sphingomonas paucimobilis SYK-6

(2013) Kevin P. Barry et al.   BIOCHEMISTRY

Central metabolic responses to the overproduction of fatty acids inEscherichia colibased on13C-metabolic flux analysis

(2013) Lian He et al.   BIOTECHNOLOGY AND BIOENGINEERING

Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation bySphingomonas wittichii RW1

(2013) Erica M. Hartmann et al.   ENVIRONMENTAL MICROBIOLOGY

Enzymatic cleavage of lignin β-O-4 aryl ether bonds via net internal hydrogen transfer

(2013) Jochen Reiter et al.   GREEN CHEMISTRY

Study of PcaV from Streptomyces coelicolor yields new insights into ligand-responsive MarR family transcription factors

(2013) Jennifer R. Davis et al.   NUCLEIC ACIDS RESEARCH

The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates

(2013) Robert C. Salmon et al.   PLoS One

Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin:p-Coumaric acid and related aromatic acids

(2013) Kemin Tan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Identification and Characterization of a Multifunctional Dye Peroxidase from a Lignin-Reactive Bacterium

(2012) Margaret E. Brown et al.   ACS Chemical Biology

Investigation of the Amycolatopsis sp. Strain ATCC 39116 Vanillin Dehydrogenase and Its Impact on the Biotechnical Production of Vanillin

(2012) Christian Fleige et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure and Catalytic Mechanism of LigI: Insight into the Amidohydrolase Enzymes of cog3618 and Lignin Degradation

(2012) Merlin Eric Hobbs et al.   BIOCHEMISTRY

Discovery of pinoresinol reductase genes in sphingomonads

(2012) Y. Fukuhara et al.   ENZYME AND MICROBIAL TECHNOLOGY

The major facilitator superfamily (MFS) revisited

(2012) Vamsee S. Reddy et al.   FEBS Journal

Sphingobiumsp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase omega class

(2012) Edgar Meux et al.   FEBS LETTERS

Characterization of FerC, a MarR-type transcriptional regulator, involved in transcriptional regulation of the ferulate catabolic operon in Sphingobium sp. strain SYK-6

(2012) Daisuke Kasai et al.   FEMS MICROBIOLOGY LETTERS

Anaerobic p-Coumarate Degradation by Rhodopseudomonas palustris and Identification of CouR, a MarR Repressor Protein That Binds p-Coumaroyl Coenzyme A

(2012) H. Hirakawa et al.   JOURNAL OF BACTERIOLOGY

Characterization of Transport Proteins for Aromatic Compounds Derived from Lignin: Benzoate Derivative Binding Proteins

(2012) Karolina Michalska et al.   JOURNAL OF MOLECULAR BIOLOGY

Global proteome survey of protocatechuate- and glucose-grown Corynebacterium glutamicum reveals multiple physiological differences

(2012) Ute Haußmann et al.   Journal of Proteomics

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

(2012) E. Fernandez-Fueyo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteogenomic evidence for β-oxidation of plant-derived 3-phenylpropanoids in “Aromatoleum aromaticum” EbN1

(2012) Kathleen Trautwein et al.   PROTEOMICS

Vanillin Catabolism in Rhodococcus jostii RHA1

(2011) Hao-Ping Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of DypB fromRhodococcus jostiiRHA1 as a Lignin Peroxidase

(2011) Mark Ahmad et al.   BIOCHEMISTRY

Characterization of the Third GlutathioneS-Transferase Gene Involved in Enantioselective Cleavage of the β-Aryl Ether bySphingobiumsp. Strain SYK-6

(2011) Kazuyuki TANAMURA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Elucidation of Lignin Structure by Quantitative 2D NMR

(2011) Marco Sette et al.   CHEMISTRY-A EUROPEAN JOURNAL

Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation

(2011) Margaret E. Brown et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti

(2011) A. M. MacLean et al.   MICROBIOLOGY-SGM

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

TonB-Dependent Transporters: Regulation, Structure, and Function

(2010) Nicholas Noinaj et al.   Annual Review of Microbiology

Characterization of the Protocatechuate 4,5-Cleavage Pathway Operon in Comamonas sp. Strain E6 and Discovery of a Novel Pathway Gene

(2010) N. Kamimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals

(2010) Joseph Zakzeski et al.   CHEMICAL REVIEWS

A structural classification of substrate-binding proteins

(2010) Ronnie P.-A. Berntsson et al.   FEBS LETTERS

PcaO Positively Regulates pcaHG of the  -Ketoadipate Pathway in Corynebacterium glutamicum

(2010) K.-X. Zhao et al.   JOURNAL OF BACTERIOLOGY

Regulatory System of the Protocatechuate 4,5-Cleavage Pathway Genes Essential for Lignin Downstream Catabolism

(2010) N. Kamimura et al.   JOURNAL OF BACTERIOLOGY

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

(2010) Taina K. Lundell et al.   JOURNAL OF BASIC MICROBIOLOGY

The  -ketoadipate pathway of Acinetobacter baylyi undergoes carbon catabolite repression, cross-regulation and vertical regulation, and is affected by Crc

(2010) F. S. Bleichrodt et al.   MICROBIOLOGY-SGM

Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida

(2010) Juan Nogales et al.   MOLECULAR MICROBIOLOGY

Reduced wood stiffness and strength, and altered stem form, in young antisense 4CL transgenic poplars with reduced lignin contents

(2010) Steven L. Voelker et al.   NEW PHYTOLOGIST

The Crystal Structure of OprG from Pseudomonas aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules across the Outer Membrane

(2010) Debra S. Touw et al.   PLoS One

Aerobic Vanillate Degradation and C1 Compound Metabolism in Bradyrhizobium japonicum

(2009) N. Sudtachat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression

(2009) A. Vanden Wymelenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Three Alcohol Dehydrogenase Genes Involved in the Stereospecific Catabolism of Arylglycerol- -Aryl Ether by Sphingobium sp. Strain SYK-6

(2009) Y. Sato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of genes in Streptomyces bacteria required for catabolism of lignin-derived aromatic compounds

(2009) Jennifer R. Davis et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A cytochrome P450 class I electron transfer system from Novosphingobium aromaticivorans

(2009) Stephen G. Bell et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pseudomonas fluorescens ompW: plasmid localization and requirement for naphthalene uptake

(2009) Tracy M. Neher et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Uncovering the Protocatechuate 2,3-Cleavage Pathway Genes

(2009) D. Kasai et al.   JOURNAL OF BACTERIOLOGY

Hydroxycinnamates in lignification

(2009) John Ralph   PHYTOCHEMISTRY REVIEWS

Regulation of ferulic catabolic genes in Pseudomonas fluorescens BF13: involvement of a MarR family regulator

(2008) C. Calisti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification of Bacterial Carotenoid Cleavage Dioxygenase Homologues That Cleave the Interphenyl α,β Double Bond of Stilbene Derivatives via a Monooxygenase Reaction

(2008) Erinn K. Marasco et al.   CHEMBIOCHEM

The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative

(2008) Bengt Persson et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Characterization ofArabidopsis thalianaPinoresinol Reductase, a New Type of Enzyme Involved in Lignan Biosynthesis

(2008) Tomoyuki Nakatsubo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic and Metabolomic Analyses of the White-Rot FungusPhanerochaete chrysosporiumExposed to Exogenous Benzoic Acid

(2008) Fumiko Matsuzaki et al.   JOURNAL OF PROTEOME RESEARCH

Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia

(2008) Goro KIKUCHI et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa

(2008) Shyamasri Biswas et al.   STRUCTURE

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES