A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA

Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA

(2020) Marie-Theres Gansauge et al.   Nature Protocols

Reconstructing double-stranded DNA fragments on a single-molecule level reveals patterns of degradation in ancient samples

(2020) Lukas Bokelmann et al.   GENOME RESEARCH

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos

(2019) Christopher J. Troll et al.   BMC GENOMICS

Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing

(2018) Nadin Rohland et al.   Nature Protocols

Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles

(2017) et al.   Genes

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

(2017) Sarah Siu Tze Mak et al.   GigaScience

Evolutionary History of the Nesophontidae, the Last Unplaced Recent Mammal Family

(2016) Selina Brace et al.   MOLECULAR BIOLOGY AND EVOLUTION

Postglacial viability and colonization in North America’s ice-free corridor

(2016) Mikkel W. Pedersen et al.   NATURE

Timing and causes of mid-Holocene mammoth extinction on St. Paul Island, Alaska

(2016) Russell W. Graham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-strand DNA library preparation improves sequencing of formalin-fixed and paraffin-embedded (FFPE) cancer DNA

(2016) Mathias Stiller et al.   Oncotarget

Library construction for ancient genomics: Single strand or double strand?

(2016) E. Andrew Bennett et al.   BIOTECHNIQUES

Surveying the repair of ancient DNA from bones via high-throughput sequencing

(2015) Nathalie Mouttham et al.   BIOTECHNIQUES

New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA

(2015) Nathan Wales et al.   BIOTECHNIQUES

Selective enrichment of damaged DNA molecules for ancient genome sequencing

(2014) Marie-Theres Gansauge et al.   GENOME RESEARCH

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

A Paleogenomic Perspective on Evolution and Gene Function: New Insights from Ancient DNA

(2014) B. Shapiro et al.   SCIENCE

A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation

(2013) Chun Kit Kwok et al.   ANALYTICAL BIOCHEMISTRY

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Withering Away--25,000 Years of Genetic Decline Preceded Cave Bear Extinction

(2010) M. Stiller et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

(2009) Adrian W. Briggs et al.   NUCLEIC ACIDS RESEARCH

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

(2009) M. Bunce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

DNA from extinct giant lemurs links archaeolemurids to extant indriids

(2008) Ludovic Orlando et al.   BMC EVOLUTIONARY BIOLOGY