Complete genome sequence and comparative genomic analysis of Enterococcus faecalis EF-2001, a probiotic bacterium

YjbH regulates virulence genes expression and oxidative stress resistance in Staphylococcus aureus

(2021) Atmika Paudel et al.   Virulence

Lactic acid bacteria-derived α-glucans: From enzymatic synthesis to miscellaneous applications

(2021) Ziwei Chen et al.   BIOTECHNOLOGY ADVANCES

Effect of heat-killed Enterococcus faecalis EF-2001 on ethanol-induced acute gastric injury in mice: Protective effect of EF-2001 on acute gastric ulcer

(2020) D-B Jeon et al.   HUMAN & EXPERIMENTAL TOXICOLOGY

β-carboline chemical signals induce reveromycin production through a LuxR family regulator in Streptomyces sp. SN-593

(2020) Suresh Panthee et al.   Scientific Reports

The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus

(2020) Suresh Panthee et al.   Frontiers in Microbiology

RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery

(2020) Alexander M. Kloosterman et al.   mSystems

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Probiotic Potential and Safety Evaluation of Enterococcus faecalis OB14 and OB15, Isolated From Traditional Tunisian Testouri Cheese and Rigouta, Using Physiological and Genomic Analysis

(2019) Olfa Baccouri et al.   Frontiers in Microbiology

Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis

(2019) Suresh Panthee et al.   Frontiers in Microbiology

Pathogenicity of Enterococci

(2019) Elizabeth Fiore et al.   Microbiology Spectrum

A Diverse Repertoire of Exopolysaccharide Biosynthesis Gene Clusters in Lactobacillus Revealed by Comparative Analysis in 106 Sequenced Genomes

(2019) Dipti Deo et al.   Microorganisms

Utilization of Hybrid Assembly Approach to Determine the Genome of an Opportunistic Pathogenic Fungus, Candida albicans TIMM 1768

(2018) Suresh Panthee et al.   Genome Biology and Evolution

The Genus Enterococcus: Between Probiotic Potential and Safety Concerns—An Update

(2018) Hasna Hanchi et al.   Frontiers in Microbiology

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

(2018) Bo Liu et al.   NUCLEIC ACIDS RESEARCH

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

In silico identification of lysocin biosynthetic gene cluster from Lysobacter sp. RH2180-5

(2016) Suresh Panthee et al.   JOURNAL OF ANTIBIOTICS

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Assessment of virulence potential of uncharacterized Enterococcus faecalis strains using pan genomic approach – Identification of pathogen–specific and habitat-specific genes

(2016) Utpal Bakshi et al.   Scientific Reports

LoRDEC: accurate and efficient long read error correction

(2014) Leena Salmela et al.   BIOINFORMATICS

Mechanisms of antibiotic resistance in enterococci

(2014) William R Miller et al.   Expert Review of Anti-Infective Therapy

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Mechanism of chromosomal transfer of Enterococcus faecalis pathogenicity island, capsule, antimicrobial resistance, and other traits

(2010) J. M. Manson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling the Aminogenic Potential of Enterococcus faecalis EF37 in Dry Fermented Sausages through Chemical and Molecular Approaches

(2008) F. Gardini et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY