Population genomics and phylogeography of the boll weevil, Anthonomus grandis Boheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina

Genome-wide markers reveal temporal instability of local population genetic structure in the cotton fleahopper, Pseudatomoscelis seriatus (Hemiptera: Miridae)

(2019) Tyler J. Raszick et al.   PEST MANAGEMENT SCIENCE

Rapid evolution in insect pests: the importance of space and time in population genomics studies

(2018) Benjamin Pélissié et al.   Current Opinion in Insect Science

Supervised Multiblock Analysis in R with the ade4 Package

(2018) Stéphanie Bougeard et al.   Journal of Statistical Software

StructureSelector : A web-based software to select and visualize the optimal number of clusters using multiple methods

(2017) Yu-Long Li et al.   Molecular Ecology Resources

The complete mitochondrial genome of Sympiezomias velatus (Coleoptera: Curculionidae)

(2017) Pei-An Tang et al.   Mitochondrial DNA Part B-Resources

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

The complete mitochondrial genomes of two weevils, Eucryptorrhynchus chinensis and E. brandti: conserved genome arrangement in Curculionidae and deficiency of tRNA-Ile gene

(2016) Zhen-Kai Liu et al.   Open Life Sciences

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Evidence for temporal population replacement and the signature of ecological adaptation in a major Neotropical malaria vector in Amazonian Peru

(2015) William Lainhart et al.   MALARIA JOURNAL

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

The complete mitochondrial genome of the red flour beetle,Tribolium castaneum(Coleoptera: Tenebrionidae)

(2014) Qiu-Ning Liu et al.   Mitochondrial DNA

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

(2013) Stephen L. Cameron   Annual Review of Entomology

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Molecular Diagnosis of Populational Variants of Anthonomus grandis (Coleoptera: Curculionidae) in North America

(2013) Norman Barr et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Population Structure and Genetic Diversity of the Boll Weevil (Coleoptera: Curculionidae) on Gossypium in North America

(2012) Adam P. Kuester et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Rapid genetic turnover in populations of the insect pest Bemisia tabaci Middle East: Asia Minor 1 in an agricultural landscape

(2012) A. Dinsdale et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Effects of Local and Landscape Factors on Population Dynamics of a Cotton Pest

(2012) Yves Carrière et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Three Decades of Farmed Escapees in the Wild: A Spatio-Temporal Analysis of Atlantic Salmon Population Genetic Structure throughout Norway

(2012) Kevin A. Glover et al.   PLoS One

Temporal Changes in Genetic Variation of Boll Weevil (Coleoptera: Curculionidae) Populations, and Implications for Population Assignment in Eradication Zones

(2011) Sung Kyoung Choi et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Phase polyphenism and preventative locust management

(2010) Gregory A. Sword et al.   JOURNAL OF INSECT PHYSIOLOGY

coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients

(2010) JINLIANG WANG   Molecular Ecology Resources

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

(2010) HOJUN SONG et al.   SYSTEMATIC ENTOMOLOGY

Evolutionary analysis of herbivorous insects in natural and agricultural environments

(2009) Aaron J Gassmann et al.   PEST MANAGEMENT SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

GenomeVx: simple web-based creation of editable circular chromosome maps

(2008) G. C. Conant et al.   BIOINFORMATICS

Genetic Profiling to Determine Potential Origins of Boll Weevils (Coleoptera: Curculionidae) Captured in a Texas Eradication Zone: Endemicity, Immigration, or Sabotage?

(2008) Kyung Seok Kim et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles

(2008) N. C. Sheffield et al.   MOLECULAR BIOLOGY AND EVOLUTION

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

(2008) H. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insect pests in winter oilseed rape affected by field and landscape characteristics

(2007) Johann G. Zaller et al.   BASIC AND APPLIED ECOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources