Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration

Sources of epigenetic variation and their applications in natural populations

(2020) Bernard Angers et al.   Evolutionary Applications

Temporal Dynamics of DNA Methylation Patterns in Response to Rearing Juvenile Steelhead (Oncorhynchus mykiss) in a Hatchery versus Simulated Stream Environment

(2019) Mackenzie R. Gavery et al.   Genes

DNA Methylation Changes in the Sperm of Captive-Reared Fish: A Route to Epigenetic Introgression in Wild Populations

(2019) Deiene Rodriguez Barreto et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species

(2019) M. Laporte et al.   Science Advances

OUP accepted manuscript

(2018)   BIOINFORMATICS

Epigenetics and the maintenance of developmental plasticity: extending the signalling theory framework

(2018) Zachary M. Laubach et al.   BIOLOGICAL REVIEWS

Evolutionary consequences of epigenetic inheritance

(2018) Martin I. Lind et al.   HEREDITY

Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability

(2018) Emma S.T. Aller et al.   G3-Genes Genomes Genetics

Sperm epigenetics and influence of environmental factors

(2018) Ida Donkin et al.   Molecular Metabolism

Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis

(2018) Etienne Danchin et al.   BIOLOGICAL REVIEWS

Sperm pre-fertilization thermal environment shapes offspring phenotype and performance

(2018) Jukka Kekäläinen et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Characterization of Genetic and Epigenetic Variation in Sperm and Red Blood Cells from Adult Hatchery and Natural-Origin Steelhead, Oncorhynchus mykiss

(2018) Mackenzie R. Gavery et al.   G3-Genes Genomes Genetics

Epigenetic memory in response to environmental stressors

(2017) Paolo Vineis et al.   FASEB JOURNAL

Genetics and the conservation of natural populations: allozymes to genomes

(2017) Fred W. Allendorf   MOLECULAR ECOLOGY

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

(2017) Jérémy Le Luyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback ( Gasterosteus aculeatus )

(2017) David C. H. Metzger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Differential methylation analysis for BS-seq data under general experimental design

(2016) Yongseok Park et al.   BIOINFORMATICS

Conservation genomics of natural and managed populations: building a conceptual and practical framework

(2016) Laura Marilyn Benestan et al.   MOLECULAR ECOLOGY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

Evolution of Epigenetic Regulation in Vertebrate Genomes

(2016) Rebecca F. Lowdon et al.   TRENDS IN GENETICS

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

Mendelian inheritance of trimodal CpG methylation sites suggests distal cis-acting genetic effects

(2016) Shaza B. Zaghlool et al.   Clinical Epigenetics

The effects of high rearing density on the potential for domestication selection in hatchery culture of steelhead (Oncorhynchus mykiss)

(2015) Neil F. Thompson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

(2015) M. Laporte et al.   MOLECULAR ECOLOGY

Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout

(2015) Melinda R. Baerwald et al.   MOLECULAR ECOLOGY

Spatial and Temporal Patterns in Smolt Survival of Wild and Hatchery Coho Salmon in the Salish Sea

(2015) Mara S. Zimmerman et al.   Marine and Coastal Fisheries

Reproductive success in wild and hatchery male coho salmon

(2015) Bryan D. Neff et al.   Royal Society Open Science

On the reproductive success of early-generation hatchery fish in the wild

(2014) Mark R. Christie et al.   Evolutionary Applications

Transgenerational Effects of Parental Rearing Environment Influence the Survivorship of Captive-Born Offspring in the Wild

(2014) Melissa L. Evans et al.   Conservation Letters

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

Effects of smolt release timing and size on the survival of hatchery-origin coho salmon in the Strait of Georgia

(2013) J.R. Irvine et al.   PROGRESS IN OCEANOGRAPHY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Timing is everything

(2011) Christopher Faulk et al.   Epigenetics

Reduced reproductive success of hatchery coho salmon in the wild: insights into most likely mechanisms

(2011) VÉRONIQUE THÉRIAULT et al.   MOLECULAR ECOLOGY

Is hatchery stocking a help or harm?

(2010) Hitoshi Araki et al.   AQUACULTURE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Genetic versus Rearing-Environment Effects on Phenotype: Hatchery and Natural Rearing Effects on Hatchery- and Wild-Born Coho Salmon

(2010) Cedar M. Chittenden et al.   PLoS One

Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators

(2010) A. G. Scoville et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic plasticity's impacts on diversification and speciation

(2010) David W. Pfennig et al.   TRENDS IN ECOLOGY & EVOLUTION

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

Human-induced evolution caused by unnatural selection through harvest of wild animals

(2009) F. W. Allendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

(2009) Eva Jablonka et al.   QUARTERLY REVIEW OF BIOLOGY

Riverine, estuarine and marine migratory behaviour and physiology of wild and hatchery-reared coho salmon Oncorhynchus kisutch (Walbaum) smolts descending the Campbell River, BC, Canada

(2008) C. M. Chittenden et al.   JOURNAL OF FISH BIOLOGY

Genetic adaptation to captivity in species conservation programs

(2007) RICHARD FRANKHAM   MOLECULAR ECOLOGY

Human influences on rates of phenotypic change in wild animal populations

(2007) ANDREW P. HENDRY et al.   MOLECULAR ECOLOGY