Novel method for the prediction of drug-drug Interaction based on gene expression profiles

Validating the validation: reanalyzing a large-scale comparison of deep learning and machine learning models for bioactivity prediction

(2020) Matthew C. Robinson et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Understanding drug–drug interaction and pharmacogenomic changes in pharmacokinetics for metabolized drugs

(2019) Leslie Z. Benet et al.   JOURNAL OF PHARMACOKINETICS AND PHARMACODYNAMICS

In silico approaches and tools for the prediction of drug metabolism and fate: A review

(2019) Sayada Reemsha Kazmi et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Drug candidate identification based on gene expression of treated cells using tensor decomposition-based unsupervised feature extraction for large-scale data

(2019) Y-h. Taguchi   BMC BIOINFORMATICS

Importance of protein dynamics in the structure-based drug discovery of class A G protein-coupled receptors (GPCRs)

(2019) Yoonji Lee et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Applications of machine learning in drug discovery and development

(2019) Jessica Vamathevan et al.   NATURE REVIEWS DRUG DISCOVERY

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Non-linear Dose Response of Lymphocyte Cell Lines to Microtubule Inhibitors

(2019) Daria M. Potashnikova et al.   Frontiers in Pharmacology

DrugR+: A comprehensive relational database for drug repurposing, combination therapy, and replacement therapy

(2019) Yosef Masoudi-Sobhanzadeh et al.   COMPUTERS IN BIOLOGY AND MEDICINE

A Structure-Based Drug Discovery Paradigm

(2019) Maria Batool et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emergent Gene Expression Responses to Drug Combinations Predict Higher-Order Drug Interactions

(2019) Martin Lukačišin et al.   Cell Systems

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings

(2019) Remzi Celebi et al.   BMC BIOINFORMATICS

Database of adverse events associated with drugs and drug combinations

(2019) Aleksandar Poleksic et al.   Scientific Reports

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

An Integrated Local Classification Model of Predicting Drug-Drug Interactions via Dempster-Shafer Theory of Evidence

(2018) Jian-Yu Shi et al.   Scientific Reports

Identification of candidate drugs using tensor-decomposition-based unsupervised feature extraction in integrated analysis of gene expression between diseases and DrugMatrix datasets

(2017) Y.-h. Taguchi   Scientific Reports

Drug–drug interactions in HCV treatment — the good, the bad and the ugly

(2016) Jacob A. Langness et al.   Nature Reviews Gastroenterology & Hepatology

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Principal component analysis: a review and recent developments

(2016) Ian T. Jolliffe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Cancer chemoprevention: Evidence of a nonlinear dose response for the protective effects of resveratrol in humans and mice

(2015) Hong Cai et al.   Science Translational Medicine

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Simulations of the Nonlinear Dose Dependence for Substrates of Influx and Efflux Transporters in the Human Intestine

(2009) Michael B. Bolger et al.   AAPS Journal