Identification of candidate drugs using tensor-decomposition-based unsupervised feature extraction in integrated analysis of gene expression between diseases and DrugMatrix datasets

A review on machine learning principles for multi-view biological data integration

(2016) Yifeng Li et al.   BRIEFINGS IN BIOINFORMATICS

Bayesian multi-tensor factorization

(2016) Suleiman A. Khan et al.   MACHINE LEARNING

Control of the negative IREStrans-acting factor KHSRP by ubiquitination

(2016) Yu-An Kung et al.   NUCLEIC ACIDS RESEARCH

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression

(2016) Y-h Taguchi   BioData Mining

Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin lineage

(2015) Y-h Taguchi   BMC BIOINFORMATICS

Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease

(2015) Y-h Taguchi et al.   BMC BIOINFORMATICS

Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner

(2015) Yoshiyuki Hizukuri et al.   BMC Medical Genomics

Compound signature detection on LINCS L1000 big data

(2015) Chenglin Liu et al.   Molecular BioSystems

TINAGL1 and B3GALNT1 are potential therapy target genes to suppress metastasis in non-small cell lung cancer

(2014) Hideaki Umeyama et al.   BMC GENOMICS

Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

(2014) Ryoichi Kinoshita et al.   BMC Systems Biology

Structure-Based Virtual Screening for Drug Discovery: Principles, Applications and Recent Advances

(2014) Evanthia Lionta et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

MPGraph: multi-view penalised graph clustering for predicting drug–target interactions

(2014) Limin Li   IET Systems Biology

DINIES: drug–target interaction network inference engine based on supervised analysis

(2014) Yoshihiro Yamanishi et al.   NUCLEIC ACIDS RESEARCH

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

(2014) Qiaonan Duan et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic Screening of Autoimmune Disease Genes and Protein Structure Prediction with FAMS for Drug Discovery

(2014) Shigeharu Ishida et al.   PROTEIN AND PEPTIDE LETTERS

Multidomain integration in the structure of the HNF-4α nuclear receptor complex

(2013) Vikas Chandra et al.   NATURE

Principal Component Analysis Based Feature Extraction Approach to Identify Circulating microRNA Biomarkers

(2013) Y-h. Taguchi et al.   PLoS One

Cross-talk between the ligand- and DNA-binding domains of estrogen receptor

(2013) Wei Huang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Diabetes and Risk of Renal Cell Carcinoma

(2012) Samy L Habib et al.   Journal of Cancer

SwissDock, a protein-small molecule docking web service based on EADock DSS

(2011) A. Grosdidier et al.   NUCLEIC ACIDS RESEARCH

Hepatocyte Nuclear Factor 4  Suppresses the Development of Hepatocellular Carcinoma

(2010) B.-F. Ning et al.   CANCER RESEARCH

Theoretical and computational approaches to ligand-based drug discovery

(2010) Angelo et al.   Frontiers in Bioscience-Landmark

Assessment of programs for ligand binding affinity prediction

(2008) Ryangguk Kim et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY