Rappemonads are haptophyte phytoplankton

Genomic insights into plastid evolution

(2020) Shannon J Sibbald et al.   Genome Biology and Evolution

A kleptoplastidic dinoflagellate and the tipping point between transient and fully integrated plastid endosymbiosis

(2019) Elisabeth Hehenberger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa

(2019) El Mahdi Bendif et al.   Nature Communications

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework

(2019) Javier del Campo et al.   Frontiers in Microbiology

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends

(2018) Christen M Klinger et al.   Genome Biology and Evolution

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export

(2018) Karine Leblanc et al.   Nature Communications

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta

(2017) Margot Tragin et al.   ENVIRONMENTAL MICROBIOLOGY

Chloropicophyceae, a new class of picophytoplanktonic prasinophytes

(2017) Adriana Lopes dos Santos et al.   Scientific Reports

Extreme Diversity of Diplonemid Eukaryotes in the Ocean

(2016) Olga Flegontova et al.   CURRENT BIOLOGY

Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality

(2016) José L. Garrido et al.   ENVIRONMENTAL MICROBIOLOGY

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

(2015) Johan Decelle et al.   Molecular Ecology Resources

Genomic perspectives on the birth and spread of plastids: Fig. 1.

(2015) John M. Archibald   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Investigating Microbial Eukaryotic Diversity from a Global Census: Insights from a Comparison of Pyrotag and Full-Length Sequences of 18S rRNA Genes

(2014) Alle A. Y. Lie et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles

(2014) Blake T Hovde et al.   BMC GENOMICS

The Mitochondrial Genomes of the Glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: Multilocus Phylogenetics Suggests a Monophyletic Archaeplastida

(2014) Christopher J. Jackson et al.   Genome Biology and Evolution

Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing

(2014) Elianne S. Egge et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules

(2014) Matus Valach et al.   NUCLEIC ACIDS RESEARCH

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method

(2012) Diane Y. Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

(2011) KAMRAN SHALCHIAN-TABRIZI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Genome Evolution of a Tertiary Dinoflagellate Plastid

(2011) Tove M. Gabrielsen et al.   PLoS One

Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life

(2011) E. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A Reassessment

(2011) El Mahdi Bendif et al.   PROTIST

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

(2009) Xiao Li Shi et al.   PLoS One

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH