Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa

Productivity changes across the mid-Pleistocene climate transition

(2018) Liselotte Diester-Haass et al.   EARTH-SCIENCE REVIEWS

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

(2018) Gregory Carrier et al.   Algal Research-Biomass Biofuels and Bioproducts

Extreme Lewontin’s Paradox in Ubiquitous Marine Phytoplankton Species

(2018) Dmitry A Filatov   MOLECULAR BIOLOGY AND EVOLUTION

Breathing more deeply: Deep ocean carbon storage during the mid-Pleistocene climate transition

(2016) Caroline H. Lear et al.   GEOLOGY

Southern Ocean phytoplankton turnover in response to stepwise Antarctic cooling over the past 15 million years

(2016) James S. Crampton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decrease in coccolithophore calcification and CO2 since the middle Miocene

(2016) Clara T. Bolton et al.   Nature Communications

Recent Reticulate Evolution in the Ecologically Dominant Lineage of Coccolithophores

(2016) El Mahdi Bendif et al.   Frontiers in Microbiology

Plio-Pleistocene climate sensitivity evaluated using high-resolution CO2 records

(2015) M. A. Martínez-Botí et al.   NATURE

Morphological and Phylogenetic Characterization of New Gephyrocapsa Isolates Suggests Introgressive Hybridization in the Emiliania/Gephyrocapsa Complex (Haptophyta)

(2015) El Mahdi Bendif et al.   PROTIST

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Cope's rule in the evolution of marine animals

(2015) N. A. Heim et al.   SCIENCE

Lineage Sorting in Apes

(2014) Thomas Mailund et al.   Annual Review of Genetics

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The Impact of the Rate Prior on Bayesian Estimation of Divergence Times with Multiple Loci

(2014) Mario Dos Reis et al.   SYSTEMATIC BIOLOGY

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic delineation between and within the widespread coccolithophore morpho-speciesEmiliania huxleyiandGephyrocapsa oceanica(Haptophyta)

(2013) El Mahdi Bendif et al.   JOURNAL OF PHYCOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

Emiliania huxleyi increases calcification but not expression of calcification-related genes in long-term exposure to elevated temperature and pCO2

(2013) I. Benner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Twenty-Fold Difference in Evolutionary Rates between the Mitochondrial and Plastid Genomes of Species with Secondary Red Plastids

(2012) David Roy Smith et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Biozonation and biochronology of Miocene through Pleistocene calcareous nannofossils from low and middle latitudes

(2012) Jan Backman et al.   NEWSLETTERS ON STRATIGRAPHY

Evolution of Ocean Temperature and Ice Volume Through the Mid-Pleistocene Climate Transition

(2012) H. Elderfield et al.   SCIENCE

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Limits to gene flow in a cosmopolitan marine planktonic diatom

(2010) G. Casteleyn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tropical Ocean Temperatures Over the Past 3.5 Million Years

(2010) T. D. Herbert et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Climate as a Driver of Evolutionary Change

(2009) Douglas H. Erwin   CURRENT BIOLOGY

Geographical distribution of cryptic genetic types in the planktonic foraminiferGlobigerinoides ruber

(2009) RALF AURAHS et al.   MOLECULAR ECOLOGY

Migration of the subtropical front as a modulator of glacial climate

(2009) Edouard Bard et al.   NATURE

The influence of oceanographic fronts and early-life-history traits on connectivity among littoral fish species

(2009) J. A. Galarza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution exacerbates the paradox of the plankton

(2008) N. Shoresh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A molecular clock for coccolithophores and implications for selectivity of phytoplankton extinctions across the K/T boundary

(2007) L.K. Medlin et al.   MARINE MICROPALEONTOLOGY