4.5 Article

Tidal Freshwater Marshes Harbor Phylogenetically Unique Clades of Sulfate Reducers That Are Resistant to Climate-Change-Induced Salinity Intrusion

Journal

ESTUARIES AND COASTS
Volume 39, Issue 4, Pages 981-991

Publisher

SPRINGER
DOI: 10.1007/s12237-016-0067-3

Keywords

Sulfate reduction; dsrA; Tidal freshwater marsh; Sea level rise

Funding

  1. Environmental Protection Agency Science to Achieve Results Grant (EPA-STAR) [RD 83222202]
  2. Villanova Undergraduate Research Fellowship
  3. National Science Foundation [NSF OCE 1353140, NSF DEB 1350491]
  4. Division Of Environmental Biology
  5. Direct For Biological Sciences [1719621, 1719418] Funding Source: National Science Foundation

Ask authors/readers for more resources

Rates of sea level rise associated with climate change are predicted to increase in the future, potentially altering ecosystems at all ecological levels. Sea level rise can increase the extent of brackish water intrusion into freshwater ecosystems, which in turn can affect the structure and function of resident microbial communities. In this study, we performed a year-long mesocosm experiment using intact tidal freshwater marsh sediment cores to examine the effect of a 5-part per thousand (ppt) salinity increase on the diversity and community composition of sulfate-reducing prokaryotes. We used a clone library approach to examine the dsrA gene, which encodes an important catalytic enzyme in sulfate reduction. Our results indicate that tidal freshwater marshes contain extremely diverse communities of sulfate-reducing bacteria. Members of these communities were, on average, only 71 % similar to known cultured sulfate reducers and 81 % similar to previously sequenced environmental clones. Salinity and associated increases in sulfate availability did not significantly affect the diversity or community composition of sulfate-reducing prokaryotes. However, carbon quality and quantity, which correlated with depth, were found to be the strongest drivers of sulfate-reducing community structure. Our study demonstrates that the sulfate-reducing community in tidal freshwater marsh sediments appears resistant to increased salinity in the face of sea level rise. Additionally, the microorganisms that comprise this sulfate-reducing community appear to be unique to tidal freshwater marsh sediments and may represent novel lineages of previously undescribed sulfate reducers.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Limnology

Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments

Ashley N. Bulseco, Joseph H. Vineis, Anna E. Murphy, Amanda C. Spivak, Anne E. Giblin, Jane Tucker, Jennifer L. Bowen

LIMNOLOGY AND OCEANOGRAPHY (2020)

Article Microbiology

Sulphide addition favours respiratory ammonification (DNRA) over complete denitrification and alters the active microbial community in salt marsh sediments

Anna E. Murphy, Ashley N. Bulseco, Ross Ackerman, Joseph H. Vineis, Jennifer L. Bowen

ENVIRONMENTAL MICROBIOLOGY (2020)

Article Environmental Sciences

Microbial Community Response to a Passive Salt Marsh Restoration

Christopher A. Lynum, Ashley N. Bulseco, Courtney M. Dunphy, Sean M. Osborne, Joseph H. Vineis, Jennifer L. Bowen

ESTUARIES AND COASTS (2020)

Article Biology

Not All Nitrogen Is Created Equal: Differential Effects of Nitrate and Ammonium Enrichment in Coastal Wetlands

Jennifer L. Bowen, Anne E. Giblin, Anna E. Murphy, Ashley N. Bulseco, Linda A. Deegan, David S. Johnson, James A. Nelson, Thomas J. Mozdzer, Hillary L. Sullivan

BIOSCIENCE (2020)

Article Biodiversity Conservation

Microbial communities of wild-captured Kemp's ridley (Lepidochelys kempii) and green sea turtles (Chelonia mydas)

Kerry L. McNally, Cody R. Mott, Jeffrey R. Guertin, Jennifer L. Bowen

Summary: This study characterized the microbiome of the oral cavity and cloaca from wild-captured Kemp's ridley and green turtles in the west coast of Florida, revealing distinct microbial communities between body sites and turtle species. The core microbiome of the green turtle cloaca was primarily from the order Clostridiales, highlighting the importance of the turtle species in determining the microbiome. High prevalence of fibropapillomatosis in green turtles was also investigated, with changes in beta diversity associated with the severity of tumors.

ENDANGERED SPECIES RESEARCH (2021)

Article Engineering, Environmental

Long-Term Fertilization Alters Nitrous Oxide Cycling Dynamics in Salt Marsh Sediments

Xuefeng Peng, Qixing Ji, John H. Angell, Patrick J. Kearns, Jennifer L. Bowen, Bess B. Ward

Summary: Salt marsh sediments are key sites for nitrogen cycling and a significant source of nitrous oxide (N2O) production and consumption. Fertilization can impact nitrogen dynamics, increasing the importance of nitrification in N2O production. Changes in specific substrate utilization rates reveal shifts in microbial community composition and functional gene expression in response to long-term fertilization.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)

Article Plant Sciences

Short- and long-term effects of nutrient enrichment on salt marsh plant production and microbial community structure

Torrance C. Hanley, Jennifer L. Bowen, Patrick J. Kearns, A. Randall Hughes

Summary: Nutrient enrichment affects plant species and soil microbes, with enriched environments promoting higher plant productivity but plants with different population histories may exhibit varied responses.

JOURNAL OF ECOLOGY (2021)

Article Multidisciplinary Sciences

Characterization of oral and cloacal microbial communities in cold-stunned Kemp's ridley sea turtles (Lepidochelys kempii) during the time course of rehabilitation

Kerry L. McNally, Charles J. Innis, Adam Kennedy, Jennifer L. Bowen

Summary: The microbial communities in the oral and cloacal samples of cold-stunned Kemp's ridley turtles were found to change significantly throughout the rehabilitation process, influenced by factors such as environment, antibiotics, and disease status. The type of antibiotic administered during rehabilitation altered the microbial community composition, but overall taxonomic diversity remained consistent.

PLOS ONE (2021)

Article Microbiology

Determining the Composition of Resident and Transient Members of the Oyster Microbiome

Andrea Unzueta-Martinez, Heather Welch, Jennifer L. Bowen

Summary: The study identified a strong population-specific signal in the microbial community composition of oysters sampled in the wild, and found that even oysters reared in a common garden environment maintained distinct gill-associated microbial communities reflecting their wild population of origin. The majority of gill-associated microbes were resident members specific to each oyster population, but a small portion of the microbial communities was transient and moved among oyster populations, suggesting stochastic assembly also contributes to the oyster gill microbiome.

FRONTIERS IN MICROBIOLOGY (2022)

Article Agriculture, Dairy & Animal Science

Evaluation of the Respiratory Microbiome and the Use of Tracheal Lavage as a Diagnostic Tool in Kemp's Ridley Sea Turtles (Lepidochelys kempii)

Kerry L. McNally, Jennifer L. Bowen, Jennifer O. Brisson, Adam Kennedy, Charles J. Innis

Summary: This study characterized the tracheal lavage microbiome of sea turtles and found that radiographic lung abnormalities do not correlate with the tracheal lavage microbiome. Culture-dependent methods under-represented the microbial community, many sea turtle pathogens were present in low abundance, and tracheal lavages were not representative of other sections of the respiratory tract. The complex pulmonary microbial community associated with pneumonia in sea turtles did not correlate well with the microbial community identified by tracheal lavage, highlighting the limitations of using tracheal lavage for identifying causative agents of pneumonia.

ANIMALS (2021)

Letter Limnology

Ocean acidification alters the diversity and structure of oyster associated microbial communities

Andrea Unzueta-Martinez, Alan M. Downey-Wall, Louise P. Cameron, Justin B. Ries, Katie E. Lotterhos, Jennifer L. Bowen

Summary: The study found that certain members of the oyster microbiome were more responsive to environmental conditions, while others were more closely linked to host condition. Different members of the oyster microbiome may contribute to the health and resistance of their hosts, with some members being more vulnerable to changing environmental conditions.

LIMNOLOGY AND OCEANOGRAPHY LETTERS (2021)

Article Environmental Sciences

Recent Acceleration of Wetland Accretion and Carbon Accumulation Along the US East Coast

Nathaniel B. Weston, Elise Rodriguez, Brian Donnelly, Elena Solohin, Kristen Jezycki, Sandra Demberger, Lori A. Sutter, James T. Morris, Scott C. Neubauer, Christopher B. Craft

Summary: The stability of coastal wetlands is influenced by sea level, plant primary production, sediment supply, and wetland vertical accretion. Human activities have impacted sediment delivery to coastal areas along the U.S East Coast. Wetlands in areas with low sediment supply may struggle to keep pace with rising sea levels. This study shows that the vertical accretion and carbon accumulation in tidal wetlands along the U.S East Coast can be explained by relative sea level rise, sediment concentration in rivers, and coastal temperature.

EARTHS FUTURE (2023)

Article Biochemistry & Molecular Biology

Assessment of heavy metal contamination in soil and produce of Philadelphia community gardens

Lauren Sage, Olivia Bassetti, Erin Johnson, Kabindra Shakya, Nathaniel Weston

Summary: Urban and ex-urban residents are increasingly using community gardens to supplement their diets, engage with neighbors, and learn new skills. However, the soils in these gardens can pose a threat to human health if contaminated with metals. This study analyzed the heavy metal content in the soils of 20 Philadelphia-region community gardens and the produce from 6 gardens, revealing that a significant portion of both soil and produce samples exceeded safe lead levels.

ENVIRONMENTAL POLLUTANTS AND BIOAVAILABILITY (2023)

Article Biotechnology & Applied Microbiology

Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes

Sherlynette Perez Castro, Elena L. Peredo, Olivia U. Mason, Joseph Vineis, Jennifer L. Bowen, Behzad Mortazavi, Anakha Ganesh, S. Emil Ruff, Blair G. Paul, Anne E. Giblin, Zoe G. Cardon

Summary: The study reveals the high diversity of sulfur-cycling microbial communities in salt marsh rhizosphere sediments, with their distribution and genomic features influenced by geographical location and plant species.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2023)

Article Microbiology

Microbiomes of the Sydney Rock Oyster are acquired through both vertical and horizontal transmission

Andrea Unzueta-Martinez, Elliot Scanes, Laura M. Parker, Pauline M. Ross, Wayne O'Connor, Jennifer L. Bowen

Summary: This study tracks the microbiomes of Sydney Rock Oyster throughout different developmental stages and finds that each larval stage has a distinct microbiome partially influenced by their parental microbiome. The study also identifies core microbes that persist across life stages and environmentally acquired microbial communities. These findings provide insights into the transmission and evolution of microbial communities in broadcast spawning marine invertebrates.

ANIMAL MICROBIOME (2022)

No Data Available