Metagenomics coupled with biogeochemical rates measurements provide evidence that nitrate addition stimulates respiration in salt marsh sediments

Nitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments

(2019) Ashley N. Bulseco et al.   GLOBAL CHANGE BIOLOGY

Cellulosome assembly: paradigms are meant to be broken!

(2018) Pedro Bule et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Nutrient Enrichment Alters Salt Marsh Fungal Communities and Promotes Putative Fungal Denitrifiers

(2018) Patrick J. Kearns et al.   MICROBIAL ECOLOGY

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Valuing ecosystem services from blue forests: A systematic review of the valuation of salt marshes, sea grass beds and mangrove forests

(2018) Amber Himes-Cornell et al.   Ecosystem Services

It Takes a Village: Microbial Communities Thrive through Interactions and Metabolic Handoffs

(2018) Laura A. Hug et al.   mSystems

Differences in possible TCA cycle replenishing pathways in purple non-sulfur bacteria possessing glyoxylate pathway

(2018) Ekaterina Petushkova et al.   PHOTOSYNTHESIS RESEARCH

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

A Ferredoxin- and F 420 H 2 -Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea

(2017) Zhen Yan et al.   mBio

Nitrogen: the historical progression from ignorance to knowledge, with a view to future solutions

(2017) James N. Galloway et al.   Soil Research

Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment

(2016) Christopher J. Graves et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oxygen interference with membrane inlet mass spectrometry may overestimate denitrification rates calculated with the isotope pairing technique

(2016) Abby Lunstrum et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Limited effects of nutrient enrichment on bacterial carbon sources in salt marsh tidal creek sediments

(2016) AC Spivak et al.   MARINE ECOLOGY PROGRESS SERIES

Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection

(2016) Deniz Bombar et al.   TRENDS IN MICROBIOLOGY

Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments

(2016) Patrick J. Kearns et al.   Nature Communications

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Limited effects of nutrient enrichment on bacterial carbon sources in salt marsh tidal creek sediments

(2016) AC Spivak et al.   MARINE ECOLOGY PROGRESS SERIES

Contributions of organic and inorganic matter to sediment volume and accretion in tidal wetlands at steady state

(2016) James T. Morris et al.   Earths Future

Hypoxia and nitrogen processing in the Baltic Sea water column

(2016) Susanna Hietanen et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties

(2015) Jeff R. Powell et al.   ECOLOGY

Plants mediate soil organic matter decomposition in response to sea level rise

(2015) Peter Mueller et al.   GLOBAL CHANGE BIOLOGY

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

(2015) James I. Prosser   NATURE REVIEWS MICROBIOLOGY

A Novel Membrane Inlet Mass Spectrometer Method to Measure 15NH4+ for Isotope-Enrichment Experiments in Aquatic Ecosystems

(2014) Guoyu Yin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Saltmarsh pool and tidal creek morphodynamics: Dynamic equilibrium of northern latitude saltmarshes?

(2014) Carol A. Wilson et al.   GEOMORPHOLOGY

Gene-centric approach to integrating environmental genomics and biogeochemical models

(2014) Daniel C. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments

(2014) François Thomas et al.   Frontiers in Microbiology

Changes in community assembly may shift the relationship between biodiversity and ecosystem function

(2014) Joseph E. Knelman et al.   Frontiers in Microbiology

Denitrification in the water column of the central Baltic Sea

(2013) Tage Dalsgaard et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Evidence and a conceptual model for the co‑occurrence of nitrogen fixation and denitrification in heterotrophic marine sediments

(2013) RW Fulweiler et al.   MARINE ECOLOGY PROGRESS SERIES

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

The Importance of Dissimilatory Nitrate Reduction to Ammonium (DNRA) in the Nitrogen Cycle of Coastal Ecosystems

(2013) Anne Giblin et al.   OCEANOGRAPHY

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

(2013) A. Murat Eren et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution

(2012) Jianwei Chen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Stoichiometry of proton translocation by respiratory complex I and its mechanistic implications

(2012) M. Wikstrom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A trait-based framework for predicting when and where microbial adaptation to climate change will affect ecosystem functioning

(2011) Matthew D. Wallenstein et al.   BIOGEOCHEMISTRY

Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis from CO2

(2011) Rudolf K Thauer   CURRENT OPINION IN MICROBIOLOGY

A blueprint for blue carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO2

(2011) Elizabeth Mcleod et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Hydrogen-isotopic variability in fatty acids from Yellowstone National Park hot spring microbial communities

(2011) Magdalena R. Osburn et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The Ethylmalonyl-CoA Pathway Is Used in Place of the Glyoxylate Cycle byMethylobacterium extorquensAM1 during Growth on Acetate

(2011) Kathrin Schneider et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments

(2011) Ketil Koop-Jakobsen et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Wetland response to sedimentation and nitrogen loading: diversification and inhibition of nitrogen-fixing microbes

(2010) S. M. Moseman-Valtierra et al.   ECOLOGICAL APPLICATIONS

The value of estuarine and coastal ecosystem services

(2010) Edward B. Barbier et al.   ECOLOGICAL MONOGRAPHS

Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?

(2010) Sergio E. Morales et al.   FEMS MICROBIOLOGY ECOLOGY

Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria

(2010) J. B. McKinlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Genome sequence ofDesulfobacterium autotrophicumHRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

(2009) Axel W. Strittmatter et al.   ENVIRONMENTAL MICROBIOLOGY

Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics

(2009) R. Peyraud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE