TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-05-14
DOI
10.1186/s12864-021-07680-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- sRNAanno—a database repository of uniformly annotated small RNAs in plants
- (2021) Chengjie Chen et al. Horticulture Research
- Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants
- (2020) Alice Lunardon et al. GENOME RESEARCH
- miR2118-dependent U-rich phasiRNA production in rice anther wall development
- (2020) Saori Araki et al. Nature Communications
- PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction
- (2020) Yuanlong Liu et al. PLANT CELL
- Pre-meiotic, 24-nt reproductive phasiRNAs are abundant in anthers of wheat and barley but not rice and maize
- (2020) Sebastien Bélanger et al. PLANT PHYSIOLOGY
- 21-nt phasiRNAs direct target mRNA cleavage in rice male germ cells
- (2020) Pengfei Jiang et al. Nature Communications
- Evolution and diversification of reproductive phased small interfering RNAs in Oryza species
- (2020) Peng Tian et al. NEW PHYTOLOGIST
- Reproductive phasiRNAs regulate reprogramming of gene expression and meiotic progression in rice
- (2020) Yu-Chan Zhang et al. Nature Communications
- 24-nt reproductive phasiRNAs are broadly present in angiosperms
- (2019) Rui Xia et al. Nature Communications
- MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions
- (2019) Xianwei Song et al. Annual Review of Plant Biology
- WPMIAS: Whole-degradome-based Plant MicroRNA–target Interaction Analysis Server
- (2019) Yuhan Fei et al. BIOINFORMATICS
- PmiREN: a comprehensive encyclopedia of plant miRNAs
- (2019) Zhonglong Guo et al. NUCLEIC ACIDS RESEARCH
- Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
- (2018) Atul Kakrana et al. GENOME RESEARCH
- psRNATarget: a plant small RNA target analysis server (2017 release)
- (2018) Xinbin Dai et al. NUCLEIC ACIDS RESEARCH
- Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data
- (2018) Michael J. Axtell et al. PLANT CELL
- miRBase: from microRNA sequences to function
- (2018) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- The ‘how’ and ‘where’ of plant microRNAs
- (2017) Yu Yu et al. NEW PHYTOLOGIST
- The Diversification of PlantNBS-LRRDefense Genes Directs the Evolution of MicroRNAs That Target Them
- (2016) Yu Zhang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis
- (2016) Shengben Li et al. eLife
- Extensive Families of miRNAs andPHASLoci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
- (2015) Rui Xia et al. MOLECULAR BIOLOGY AND EVOLUTION
- The expanding world of small RNAs in plants
- (2015) Filipe Borges et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers
- (2015) Jixian Zhai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PhaseTank: genome-wide computational identification of phasiRNAs and their regulatory cascades
- (2014) Qingli Guo et al. BIOINFORMATICS
- comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants
- (2014) U. Chorostecki et al. BIOINFORMATICS
- Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)
- (2014) Fenglong Sun et al. BMC PLANT BIOLOGY
- sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
- (2014) Atul Kakrana et al. NUCLEIC ACIDS RESEARCH
- An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes
- (2014) Siwaret Arikit et al. PLANT CELL
- Analysis of Complementarity Requirements for Plant MicroRNA Targeting Using a Nicotiana benthamiana Quantitative Transient Assay
- (2014) Q. Liu et al. PLANT CELL
- Classification and Comparison of Small RNAs from Plants
- (2013) Michael J. Axtell Annual Review of Plant Biology
- MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis
- (2013) Shengben Li et al. CELL
- Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks
- (2013) Q. Fei et al. PLANT CELL
- PsRobot: a web-based plant small RNA meta-analysis toolbox
- (2012) Hua-Jun Wu et al. NUCLEIC ACIDS RESEARCH
- PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
- (2012) Leighton Folkes et al. NUCLEIC ACIDS RESEARCH
- Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing
- (2012) Z. Tang et al. PLANT PHYSIOLOGY
- MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
- (2011) J. Zhai et al. GENES & DEVELOPMENT
- Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
- (2011) Xianwei Song et al. PLANT JOURNAL
- TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
- (2010) Eric Bonnet et al. BIOINFORMATICS
- Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
- (2010) Josh T Cuperus et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- 22-nucleotide RNAs trigger secondary siRNA biogenesis in plants
- (2010) H.-M. Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Origin, Biogenesis, and Activity of Plant MicroRNAs
- (2009) Olivier Voinnet CELL
- Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
- (2009) C. Johnson et al. GENOME RESEARCH
- Distinct extremely abundant siRNAs associated with cosuppression in petunia
- (2009) E. De Paoli et al. RNA
- CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
- (2008) C. Addo-Quaye et al. BIOINFORMATICS
- Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome
- (2008) Charles Addo-Quaye et al. CURRENT BIOLOGY
- Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends
- (2008) Marcelo A German et al. NATURE BIOTECHNOLOGY
- Widespread Translational Inhibition by Plant miRNAs and siRNAs
- (2008) P. Brodersen et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now