Metagenomic characterization of biofloc in the grow‐out culture of Genetically Improved Farmed Tilapia (GIFT)

MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs

(2019) Stuart M Brown et al.   GigaScience

Metagenomic analysis of bacterial communities and antibiotic resistance genes in the Eriocheir sinensis freshwater aquaculture environment

(2019) Hao Fang et al.   CHEMOSPHERE

Effect of in-situ and ex-situ biofloc on immune response of Genetically Improved Farmed Tilapia

(2019) M. Menaga et al.   FISH & SHELLFISH IMMUNOLOGY

The effect of different carbon sources on water quality, microbial community and structure of biofloc systems

(2018) Min Deng et al.   AQUACULTURE

Amaranth and wheat grains tested as nucleation sites of microbial communities to produce bioflocs used for shrimp culture

(2018) Luis R. Martínez-Córdova et al.   AQUACULTURE

Carbon: Nitrogen (C:N) ratio level variation influences microbial community of the system and growth as well as immunity of shrimp (Litopenaeus vannamei) in biofloc based culture system

(2018) A. Panigrahi et al.   FISH & SHELLFISH IMMUNOLOGY

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

(2018) Natacha Couto et al.   Scientific Reports

Aquatic organic matter: Classification and interaction with organic microcontaminants

(2018) Vanda Artifon et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Impact of environmental bacterial communities on fish health in marine recirculating aquaculture systems

(2017) Shuxia Xue et al.   VETERINARY MICROBIOLOGY

The effect of different carbon sources on the nutritional composition, microbial community and structure of bioflocs

(2016) YanFang Wei et al.   AQUACULTURE

Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system

(2016) Emilie Cardona et al.   BMC MICROBIOLOGY

Streptomyces Bacteria as Potential Probiotics in Aquaculture

(2016) Loh Teng-Hern Tan et al.   Frontiers in Microbiology

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities

(2015) Michael A. Peabody et al.   BMC BIOINFORMATICS

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

(2015) Nejc Stopnisek et al.   ISME Journal

‘Candidatus Competibacter’-lineage genomes retrieved from metagenomes reveal functional metabolic diversity

(2013) Simon J McIlroy et al.   ISME Journal

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Insights into the phylogenetic and taxonomy of philasterid ciliates (Protozoa, Ciliophora, Scuticociliatia) based on analyses of multiple molecular markers

(2012) Feng Gao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge

(2012) Ke Yu et al.   PLoS One

Virus Identification in Unknown Tropical Febrile Illness Cases Using Deep Sequencing

(2012) Nathan L. Yozwiak et al.   PLoS Neglected Tropical Diseases

Effect of calcium hydroxide, carbonate and sodium bicarbonate on water quality and zootechnical performance of shrimp Litopenaeus vannamei reared in bio-flocs technology (BFT) systems

(2011) Plínio S. Furtado et al.   AQUACULTURE

Metagenomics and the protein universe

(2011) Adam Godzik   CURRENT OPINION IN STRUCTURAL BIOLOGY

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

(2010) Fabiola M Carvalho et al.   BMC MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The basics of bio-flocs technology: The added value for aquaculture

(2008) P. De Schryver et al.   AQUACULTURE

The biofloc technology (BFT) in indoor tanks: Water quality, biofloc composition, and growth and welfare of Nile tilapia (Oreochromis niloticus)

(2008) M.E. Azim et al.   AQUACULTURE

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

(2008) Jack A. Gilbert et al.   PLoS One