Biosystematic studies on the status ofSolanum chilense

Extant timetrees are consistent with a myriad of diversification histories

(2020) Stilianos Louca et al.   NATURE

Population Genomics in Wild Tomatoes—The Interplay of Divergence and Admixture

(2017) Ian Beddows et al.   Genome Biology and Evolution

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How and how much does RAD-seq bias genetic diversity estimates?

(2016) Marie Cariou et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

North–South Colonization Associated with Local Adaptation of the Wild Tomato SpeciesSolanum chilense

(2015) Katharina B. Böndel et al.   MOLECULAR BIOLOGY AND EVOLUTION

The scope of Baker's law

(2015) John R. Pannell et al.   NEW PHYTOLOGIST

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

(2014) Wayne P. Maddison et al.   SYSTEMATIC BIOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines

(2013) D. H. Chitwood et al.   PLANT CELL

MIGRATION RATES, FREQUENCY-DEPENDENT SELECTION AND THE SELF-INCOMPATIBILITY LOCUS IN LEAVENWORTHIA (BRASSICACEAE)

(2011) Simon Joly et al.   EVOLUTION

Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica

(2011) J. W. Busch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection

(2011) Vincent Castric et al.   PLoS Genetics

Ecological and geographic modes of species divergence in wild tomatoes

(2010) Takuya Nakazato et al.   AMERICAN JOURNAL OF BOTANY

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

ENMTools: a toolbox for comparative studies of environmental niche models

(2010) Dan L. Warren et al.   ECOGRAPHY

Hybrid Incompatibility "Snowballs" Between Solanum Species

(2010) L. C. Moyle et al.   SCIENCE

Species Selection Maintains Self-Incompatibility

(2010) E. E. Goldberg et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Distribution, ecology and reproductive biology of wild tomatoes and related nightshades from the Atacama Desert region of northern Chile

(2009) Roger T. Chetelat et al.   EUPHYTICA

THE BIOLOGY OF SPECIATION

(2009) James M. Sobel et al.   EVOLUTION

Molecular Evolution within and between Self-Incompatibility Specificities

(2009) V. Castric et al.   MOLECULAR BIOLOGY AND EVOLUTION

ECOLOGICAL AND EVOLUTIONARY GENOMICS IN THE WILD TOMATOES (SOLANUM SECT. LYCOPERSICON)

(2008) Leonie C. Moyle   EVOLUTION

ENVIRONMENTAL FACTORS PREDICT ADAPTIVE PHENOTYPIC DIFFERENTIATION WITHIN AND BETWEEN TWO WILD ANDEAN TOMATOES

(2008) Takuya Nakazato et al.   EVOLUTION

ON PHYLOGENETIC TESTS OF IRREVERSIBLE EVOLUTION

(2008) Emma E. Goldberg et al.   EVOLUTION

Population Genetics of Speciation in Two Closely Related Wild Tomatoes (Solanum Section Lycopersicon)

(2008) Thomas Städler et al.   GENETICS

Loss of Self‐Incompatibility and Its Evolutionary Consequences

(2008) Boris Igic et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

A 15-Myr-Old Genetic Bottleneck

(2008) T. Paape et al.   MOLECULAR BIOLOGY AND EVOLUTION