Genome‐scale data resolves the timing of divergence in Joshua trees

Strong Selection Against Early Generation Hybrids in Joshua Tree Hybrid Zone Not Explained by Pollinators Alone

(2020) Anne M. Royer et al.   Frontiers in Plant Science

Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae: Andropogoneae)

(2019) Cassiano A.D. Welker et al.   TAXON

The Mutation Rate and the Age of the Sex Chromosomes in Silene latifolia

(2018) Marc Krasovec et al.   CURRENT BIOLOGY

Population genomics of divergence within an obligate pollination mutualism: Selection maintains differences between Joshua tree species

(2016) Anne M. Royer et al.   AMERICAN JOURNAL OF BOTANY

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae)

(2016) Michael R. McKain et al.   AMERICAN JOURNAL OF BOTANY

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes

(2016) Michael R. McKain et al.   BIOINFORMATICS

Mutation rate analysis via parent–progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

(2016) Zhengqing Xie et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Monocot fossils suitable for molecular dating analyses

(2015) William J. D. Iles et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Mutation Rates in Plastid Genomes: They Are Lower than You Might Think

(2015) David Roy Smith   Genome Biology and Evolution

IMa2p - parallel MCMC and inference of ancient demography under the Isolation with migration (IM) model

(2015) Arun Sethuraman et al.   Molecular Ecology Resources

Orchid phylogenomics and multiple drivers of their extraordinary diversification

(2015) Thomas J. Givnish et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Yucca aloifolia (Asparagaceae) opts out of an obligate pollination mutualism1

(2014) J. D. Rentsch et al.   AMERICAN JOURNAL OF BOTANY

Coevolution and the Diversification of Life

(2014) David H. Hembry et al.   AMERICAN NATURALIST

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Effects of gene flow on phenotype matching between two varieties of Joshua tree (Yucca brevifolia; Agavaceae) and their pollinators

(2013) J. B. Yoder et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Testing for coevolutionary diversification: linking pattern with process

(2013) David M. Althoff et al.   TRENDS IN ECOLOGY & EVOLUTION

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)

(2012) Michael R. McKain et al.   AMERICAN JOURNAL OF BOTANY

Asymmetric hybridization and gene flow between Joshua trees (Agavaceae:Yucca) reflect differences in pollinator host specificity

(2012) Tyler N. Starr et al.   MOLECULAR ECOLOGY

The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates

(2011) Brandon Gaut et al.   Annual Review of Ecology Evolution and Systematics

Geographic isolation trumps coevolution as a driver of yucca and yucca moth diversification

(2011) David M. Althoff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

(2011) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative Phylogeography of a Coevolved Community: Concerted Population Expansions in Joshua Trees and Four Yucca Moths

(2011) Christopher Irwin Smith et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

The age and diversification of the angiosperms re-revisited

(2010) Charles D. Bell et al.   AMERICAN JOURNAL OF BOTANY

When Does Coevolution Promote Diversification?

(2010) Jeremy B. Yoder et al.   AMERICAN NATURALIST

Past and ongoing shifts in Joshua tree distribution support future modeled range contraction

(2010) Kenneth L. Cole et al.   ECOLOGICAL APPLICATIONS

Absence of population-level phenotype matching in an obligate pollination mutualism

(2010) W. GODSOE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Phylogeography of the ground squirrel subgenusXerospermophilusand assembly of the Mojave Desert biota

(2009) Kayce C. Bell et al.   JOURNAL OF BIOGEOGRAPHY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Host specificity and reproductive success of yucca moths (Tegeticula spp. Lepidoptera: Prodoxidae) mirror patterns of gene flow between host plant varieties of the Joshua tree (Yucca brevifolia: Agavaceae)

(2009) CHRISTOPHER IRWIN SMITH et al.   MOLECULAR ECOLOGY

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Coevolution and Divergence in the Joshua Tree/Yucca Moth Mutualism

(2008) William Godsoe et al.   AMERICAN NATURALIST

DISTINGUISHING COEVOLUTION FROM COVICARIANCE IN AN OBLIGATE POLLINATION MUTUALISM: ASYNCHRONOUS DIVERGENCE IN JOSHUA TREE AND ITS POLLINATORS

(2008) Christopher Irwin Smith et al.   EVOLUTION

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE

Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification

(2007) C. I. Smith et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES