Cryo-Electron Microscopy and Mass Analysis of Oligolysine-Coated DNA Nanostructures

Glutaraldehyde Cross-Linking of Oligolysines Coating DNA Origami Greatly Reduces Susceptibility to Nuclease Degradation

(2020) Frances M. Anastassacos et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution

(2020) Massimo Kube et al.   Nature Communications

Dissecting FOXP2 oligomerization and DNA binding

(2019) Hendrik Dietz et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Custom-Size, Functional, and Durable DNA Origami with Design-Specific Scaffolds

(2019) Floris A. S. Engelhardt et al.   ACS Nano

Counterion-Dependent Mechanisms of DNA Origami Nanostructure Stabilization Revealed by Atomistic Molecular Simulation

(2019) Job A. L. Roodhuizen et al.   ACS Nano

Building machines with DNA molecules

(2019) Hamid Ramezani et al.   NATURE REVIEWS GENETICS

On the Stability of DNA Origami Nanostructures in Low-Magnesium Buffers

(2018) Charlotte Kielar et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo

(2018) Suping Li et al.   NATURE BIOTECHNOLOGY

Quantitative mass imaging of single biological macromolecules

(2018) Gavin Young et al.   SCIENCE

Sequence-programmable covalent bonding of designed DNA assemblies

(2018) Thomas Gerling et al.   Science Advances

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components

(2017) Luvena L. Ong et al.   NATURE

Gigadalton-scale shape-programmable DNA assemblies

(2017) Klaus F. Wagenbauer et al.   NATURE

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes

(2017) Florian Praetorius et al.   SCIENCE

Oligolysine-based coating protects DNA nanostructures from low-salt denaturation and nuclease degradation

(2017) Nandhini Ponnuswamy et al.   Nature Communications

Dynamic Chemistry of Disulfide Terminated Oligonucleotides in Duplexes and Double-Crossover Tiles

(2016) Mattia De Stefano et al.   CHEMBIOCHEM

Plasmon–Exciton Coupling Using DNA Templates

(2016) Eva-Maria Roller et al.   NANO LETTERS

Engineering and mapping nanocavity emission via precision placement of DNA origami

(2016) Ashwin Gopinath et al.   NATURE

De novoreconstruction of DNA origami structures through atomistic molecular dynamics simulation

(2016) Christopher Maffeo et al.   NUCLEIC ACIDS RESEARCH

Design of a molecular support for cryo-EM structure determination

(2016) Thomas G. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular force spectroscopy with a DNA origami–based nanoscopic force clamp

(2016) Philipp C. Nickels et al.   SCIENCE

Single-molecule dissection of stacking forces in DNA

(2016) F. Kilchherr et al.   SCIENCE

Designer nanoscale DNA assemblies programmed from the top down

(2016) R. Veneziano et al.   SCIENCE

Nanoscale rotary apparatus formed from tight-fitting 3D DNA components

(2016) P. Ketterer et al.   Science Advances

Uncovering the forces between nucleosomes using DNA origami

(2016) J. J. Funke et al.   Science Advances

One-Step Formation of “Chain-Armor”-Stabilized DNA Nanostructures

(2015) Valentina Cassinelli et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

DNA-Assembled Nanoparticle Rings Exhibit Electric and Magnetic Resonances at Visible Frequencies

(2015) Eva-Maria Roller et al.   NANO LETTERS

Efficient Production of Single-Stranded Phage DNA as Scaffolds for DNA Origami

(2015) Benjamin Kick et al.   NANO LETTERS

DNA rendering of polyhedral meshes at the nanoscale

(2015) Erik Benson et al.   NATURE

Routing of individual polymers in designed patterns

(2015) Jakob Bach Knudsen et al.   Nature Nanotechnology

Complex wireframe DNA origami nanostructures with multi-arm junction vertices

(2015) Fei Zhang et al.   Nature Nanotechnology

Placing molecules with Bohr radius resolution using DNA origami

(2015) Jonas J. Funke et al.   Nature Nanotechnology

Programmable motion of DNA origami mechanisms

(2015) Alexander E. Marras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components

(2015) T. Gerling et al.   SCIENCE

Plasmonic DNA-Origami Nanoantennas for Surface-Enhanced Raman Spectroscopy

(2014) Paul Kühler et al.   NANO LETTERS

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures

(2014) Ryan McGreevy et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

DNA Gridiron Nanostructures Based on Four-Arm Junctions

(2013) D. Han et al.   SCIENCE

Chiral plasmonic DNA nanostructures with switchable circular dichroism

(2013) Robert Schreiber et al.   Nature Communications

DNA Origami Gatekeepers for Solid-State Nanopores

(2012) Ruoshan Wei et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response

(2012) Anton Kuzyk et al.   NATURE

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Cryo-EM structure of a 3D DNA-origami object

(2012) X.-c. Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures

(2012) M. Langecker et al.   SCIENCE

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas

(2012) G. P. Acuna et al.   SCIENCE

Tug-of-War in Motor Protein Ensembles Revealed with a Programmable DNA Origami Scaffold

(2012) N. D. Derr et al.   SCIENCE

Functional Patterning of DNA Origami by Parallel Enzymatic Modification

(2011) Kasper Jahn et al.   BIOCONJUGATE CHEMISTRY

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

(2011) Katarina Hart et al.   Journal of Chemical Theory and Computation

Photo-Cross-Linking-Assisted Thermal Stability of DNA Origami Structures and Its Application for Higher-Temperature Self-Assembly

(2011) Arivazhagan Rajendran et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching

(2011) Marcelo J. Berardi et al.   NATURE

Programmable molecular recognition based on the geometry of DNA nanostructures

(2011) Sungwook Woo et al.   Nature Chemistry

DNA Origami with Complex Curvatures in Three-Dimensional Space

(2011) D. Han et al.   SCIENCE

Programmable Periodicity of Quantum Dot Arrays with DNA Origami Nanotubes

(2010) Hieu Bui et al.   NANO LETTERS

DNA Origami as a Nanoscopic Ruler for Super-Resolution Microscopy

(2009) Christian Steinhauer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields

(2009) K. Vanommeslaeghe et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Multilayer DNA Origami Packed on a Square Lattice

(2009) Yonggang Ke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Large-area spatially ordered arrays of gold nanoparticles directed by lithographically confined DNA origami

(2009) Albert M. Hung et al.   Nature Nanotechnology

Placement and orientation of individual DNA shapes on lithographically patterned surfaces

(2009) Ryan J. Kershner et al.   Nature Nanotechnology

Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates

(2009) Hareem T. Maune et al.   Nature Nanotechnology

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Folding DNA into Twisted and Curved Nanoscale Shapes

(2009) H. Dietz et al.   SCIENCE

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

(2008) Leonardo G. Trabuco et al.   STRUCTURE